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OTUD3 (OTU deubiquitinase 3)

Identity

Alias_namesOTU domain containing 3
Alias_symbol (synonym)KIAA0459
DUBA4
Other alias
HGNC (Hugo) OTUD3
LocusID (NCBI) 23252
Atlas_Id 55742
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 19882395 and ends at 19912944 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OTUD3   29038
Cards
Entrez_Gene (NCBI)OTUD3  23252  OTU deubiquitinase 3
AliasesDUBA4
GeneCards (Weizmann)OTUD3
Ensembl hg19 (Hinxton)ENSG00000169914 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169914 [Gene_View]  chr1:19882395-19912944 [Contig_View]  OTUD3 [Vega]
ICGC DataPortalENSG00000169914
TCGA cBioPortalOTUD3
AceView (NCBI)OTUD3
Genatlas (Paris)OTUD3
WikiGenes23252
SOURCE (Princeton)OTUD3
Genetics Home Reference (NIH)OTUD3
Genomic and cartography
GoldenPath hg38 (UCSC)OTUD3  -     chr1:19882395-19912944 +  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OTUD3  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblOTUD3 - 1p36.13 [CytoView hg19]  OTUD3 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBIOTUD3 [Mapview hg19]  OTUD3 [Mapview hg38]
OMIM611758   
Gene and transcription
Genbank (Entrez)AA829387 AB007928 BC119636 BC134416 CV573628
RefSeq transcript (Entrez)NM_015207
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OTUD3
Cluster EST : UnigeneHs.374987 [ NCBI ]
CGAP (NCI)Hs.374987
Alternative Splicing GalleryENSG00000169914
Gene ExpressionOTUD3 [ NCBI-GEO ]   OTUD3 [ EBI - ARRAY_EXPRESS ]   OTUD3 [ SEEK ]   OTUD3 [ MEM ]
Gene Expression Viewer (FireBrowse)OTUD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23252
GTEX Portal (Tissue expression)OTUD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T2D3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T2D3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T2D3
Splice isoforms : SwissVarQ5T2D3
PhosPhoSitePlusQ5T2D3
Domaine pattern : Prosite (Expaxy)OTU (PS50802)   
Domains : Interpro (EBI)OTU_dom   
Domain families : Pfam (Sanger)OTU (PF02338)   
Domain families : Pfam (NCBI)pfam02338   
Conserved Domain (NCBI)OTUD3
DMDM Disease mutations23252
Blocks (Seattle)OTUD3
PDB (SRS)4BOU   
PDB (PDBSum)4BOU   
PDB (IMB)4BOU   
PDB (RSDB)4BOU   
Structural Biology KnowledgeBase4BOU   
SCOP (Structural Classification of Proteins)4BOU   
CATH (Classification of proteins structures)4BOU   
SuperfamilyQ5T2D3
Human Protein AtlasENSG00000169914
Peptide AtlasQ5T2D3
IPIIPI00847831   
Protein Interaction databases
DIP (DOE-UCLA)Q5T2D3
IntAct (EBI)Q5T2D3
FunCoupENSG00000169914
BioGRIDOTUD3
STRING (EMBL)OTUD3
ZODIACOTUD3
Ontologies - Pathways
QuickGOQ5T2D3
Ontology : AmiGOthiol-dependent ubiquitin-specific protease activity  thiol-dependent ubiquitin-specific protease activity  cytoplasm  cytosol  protein deubiquitination  protein K11-linked deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  protein K6-linked deubiquitination  protein stabilization  protein stabilization  negative regulation of protein kinase B signaling  negative regulation of protein kinase B signaling  protein K48-linked deubiquitination  protein K27-linked deubiquitination  
Ontology : EGO-EBIthiol-dependent ubiquitin-specific protease activity  thiol-dependent ubiquitin-specific protease activity  cytoplasm  cytosol  protein deubiquitination  protein K11-linked deubiquitination  thiol-dependent ubiquitinyl hydrolase activity  protein K6-linked deubiquitination  protein stabilization  protein stabilization  negative regulation of protein kinase B signaling  negative regulation of protein kinase B signaling  protein K48-linked deubiquitination  protein K27-linked deubiquitination  
NDEx NetworkOTUD3
Atlas of Cancer Signalling NetworkOTUD3
Wikipedia pathwaysOTUD3
Orthology - Evolution
OrthoDB23252
GeneTree (enSembl)ENSG00000169914
Phylogenetic Trees/Animal Genes : TreeFamOTUD3
HOVERGENQ5T2D3
HOGENOMQ5T2D3
Homologs : HomoloGeneOTUD3
Homology/Alignments : Family Browser (UCSC)OTUD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOTUD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OTUD3
dbVarOTUD3
ClinVarOTUD3
1000_GenomesOTUD3 
Exome Variant ServerOTUD3
ExAC (Exome Aggregation Consortium)OTUD3 (select the gene name)
Genetic variants : HAPMAP23252
Genomic Variants (DGV)OTUD3 [DGVbeta]
DECIPHEROTUD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOTUD3 
Mutations
ICGC Data PortalOTUD3 
TCGA Data PortalOTUD3 
Broad Tumor PortalOTUD3
OASIS PortalOTUD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOTUD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOTUD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OTUD3
DgiDB (Drug Gene Interaction Database)OTUD3
DoCM (Curated mutations)OTUD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OTUD3 (select a term)
intoGenOTUD3
Cancer3DOTUD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611758   
Orphanet
MedgenOTUD3
Genetic Testing Registry OTUD3
NextProtQ5T2D3 [Medical]
TSGene23252
GENETestsOTUD3
Target ValidationOTUD3
Huge Navigator OTUD3 [HugePedia]
snp3D : Map Gene to Disease23252
BioCentury BCIQOTUD3
ClinGenOTUD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23252
Chemical/Pharm GKB GenePA142671215
Clinical trialOTUD3
Miscellaneous
canSAR (ICR)OTUD3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOTUD3
EVEXOTUD3
GoPubMedOTUD3
iHOPOTUD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:48:09 CEST 2017

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