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OTUD6A (OTU deubiquitinase 6A)

Identity

Alias_namesOTU domain containing 6A
Alias_symbol (synonym)FLJ25831
HSHIN6
DUBA2
Other alias
HGNC (Hugo) OTUD6A
LocusID (NCBI) 139562
Atlas_Id 71583
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 69282341 and ends at 69284029 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OTUD6A   32312
Cards
Entrez_Gene (NCBI)OTUD6A  139562  OTU deubiquitinase 6A
AliasesDUBA2; HSHIN6
GeneCards (Weizmann)OTUD6A
Ensembl hg19 (Hinxton)ENSG00000189401 [Gene_View]  chrX:69282341-69284029 [Contig_View]  OTUD6A [Vega]
Ensembl hg38 (Hinxton)ENSG00000189401 [Gene_View]  chrX:69282341-69284029 [Contig_View]  OTUD6A [Vega]
ICGC DataPortalENSG00000189401
TCGA cBioPortalOTUD6A
AceView (NCBI)OTUD6A
Genatlas (Paris)OTUD6A
WikiGenes139562
SOURCE (Princeton)OTUD6A
Genetics Home Reference (NIH)OTUD6A
Genomic and cartography
GoldenPath hg19 (UCSC)OTUD6A  -     chrX:69282341-69284029 +  Xq13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OTUD6A  -     Xq13.1   [Description]    (hg38-Dec_2013)
EnsemblOTUD6A - Xq13.1 [CytoView hg19]  OTUD6A - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIOTUD6A [Mapview hg19]  OTUD6A [Mapview hg38]
OMIM300714   
Gene and transcription
Genbank (Entrez)AK098697 BC137355 BC137356
RefSeq transcript (Entrez)NM_207320
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011651 NW_004929443
Consensus coding sequences : CCDS (NCBI)OTUD6A
Cluster EST : UnigeneHs.447381 [ NCBI ]
CGAP (NCI)Hs.447381
Alternative Splicing GalleryENSG00000189401
Gene ExpressionOTUD6A [ NCBI-GEO ]   OTUD6A [ EBI - ARRAY_EXPRESS ]   OTUD6A [ SEEK ]   OTUD6A [ MEM ]
Gene Expression Viewer (FireBrowse)OTUD6A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139562
GTEX Portal (Tissue expression)OTUD6A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L8S5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L8S5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L8S5
Splice isoforms : SwissVarQ7L8S5
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ7L8S5
Domaine pattern : Prosite (Expaxy)OTU (PS50802)   
Domains : Interpro (EBI)OTU   
Domain families : Pfam (Sanger)OTU (PF02338)   
Domain families : Pfam (NCBI)pfam02338   
Conserved Domain (NCBI)OTUD6A
DMDM Disease mutations139562
Blocks (Seattle)OTUD6A
SuperfamilyQ7L8S5
Human Protein AtlasENSG00000189401
Peptide AtlasQ7L8S5
HPRD13681
IPIIPI00152599   
Protein Interaction databases
DIP (DOE-UCLA)Q7L8S5
IntAct (EBI)Q7L8S5
FunCoupENSG00000189401
BioGRIDOTUD6A
STRING (EMBL)OTUD6A
ZODIACOTUD6A
Ontologies - Pathways
QuickGOQ7L8S5
Ontology : AmiGOubiquitin-specific protease activity  protein K29-linked deubiquitination  protein K11-linked deubiquitination  protein K27-linked deubiquitination  protein K33-linked deubiquitination  
Ontology : EGO-EBIubiquitin-specific protease activity  protein K29-linked deubiquitination  protein K11-linked deubiquitination  protein K27-linked deubiquitination  protein K33-linked deubiquitination  
NDEx NetworkOTUD6A
Atlas of Cancer Signalling NetworkOTUD6A
Wikipedia pathwaysOTUD6A
Orthology - Evolution
OrthoDB139562
GeneTree (enSembl)ENSG00000189401
Phylogenetic Trees/Animal Genes : TreeFamOTUD6A
HOVERGENQ7L8S5
HOGENOMQ7L8S5
Homologs : HomoloGeneOTUD6A
Homology/Alignments : Family Browser (UCSC)OTUD6A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOTUD6A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OTUD6A
dbVarOTUD6A
ClinVarOTUD6A
1000_GenomesOTUD6A 
Exome Variant ServerOTUD6A
ExAC (Exome Aggregation Consortium)OTUD6A (select the gene name)
Genetic variants : HAPMAP139562
Genomic Variants (DGV)OTUD6A [DGVbeta]
DECIPHER (Syndromes)X:69282341-69284029  ENSG00000189401
CONAN: Copy Number AnalysisOTUD6A 
Mutations
ICGC Data PortalOTUD6A 
TCGA Data PortalOTUD6A 
Broad Tumor PortalOTUD6A
OASIS PortalOTUD6A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOTUD6A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOTUD6A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OTUD6A
DgiDB (Drug Gene Interaction Database)OTUD6A
DoCM (Curated mutations)OTUD6A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OTUD6A (select a term)
intoGenOTUD6A
Cancer3DOTUD6A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300714   
Orphanet
MedgenOTUD6A
Genetic Testing Registry OTUD6A
NextProtQ7L8S5 [Medical]
TSGene139562
GENETestsOTUD6A
Huge Navigator OTUD6A [HugePedia]
snp3D : Map Gene to Disease139562
BioCentury BCIQOTUD6A
ClinGenOTUD6A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139562
Chemical/Pharm GKB GenePA142671218
Clinical trialOTUD6A
Miscellaneous
canSAR (ICR)OTUD6A (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOTUD6A
EVEXOTUD6A
GoPubMedOTUD6A
iHOPOTUD6A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:32 CET 2017

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