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OTULINL (OTU deubiquitinase with linear linkage specificity like)

Identity

Alias (NCBI)FAM105A
NET20
HGNC (Hugo) OTULINL
LocusID (NCBI) 54491
Atlas_Id 80316
Location 5p15.2  [Link to chromosome band 5p15]
Location_base_pair Starts at 14581792 and ends at 14616178 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)OTULINL   25629
Cards
Entrez_Gene (NCBI)OTULINL    OTU deubiquitinase with linear linkage specificity like
AliasesFAM105A; NET20
GeneCards (Weizmann)OTULINL
Ensembl hg19 (Hinxton)ENSG00000145569 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145569 [Gene_View]  ENSG00000145569 [Sequence]  chr5:14581792-14616178 [Contig_View]  OTULINL [Vega]
ICGC DataPortalENSG00000145569
TCGA cBioPortalOTULINL
AceView (NCBI)OTULINL
Genatlas (Paris)OTULINL
SOURCE (Princeton)OTULINL
Genetics Home Reference (NIH)OTULINL
Genomic and cartography
GoldenPath hg38 (UCSC)OTULINL  -     chr5:14581792-14616178 +  5p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OTULINL  -     5p15.2   [Description]    (hg19-Feb_2009)
GoldenPathOTULINL - 5p15.2 [CytoView hg19]  OTULINL - 5p15.2 [CytoView hg38]
ImmunoBaseENSG00000145569
Genome Data Viewer NCBIOTULINL [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF052146 AK001989 AK125648 AK222731 AL512750
RefSeq transcript (Entrez)NM_019018
Consensus coding sequences : CCDS (NCBI)OTULINL
Gene ExpressionOTULINL [ NCBI-GEO ]   OTULINL [ EBI - ARRAY_EXPRESS ]   OTULINL [ SEEK ]   OTULINL [ MEM ]
Gene Expression Viewer (FireBrowse)OTULINL [ Firebrowse - Broad ]
GenevisibleExpression of OTULINL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54491
GTEX Portal (Tissue expression)OTULINL
Human Protein AtlasENSG00000145569-OTULINL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUU6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUU6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUU6
PhosPhoSitePlusQ9NUU6
Domains : Interpro (EBI)FAM105    OTULINL   
Domain families : Pfam (Sanger)Peptidase_C101 (PF16218)   
Domain families : Pfam (NCBI)pfam16218   
Conserved Domain (NCBI)OTULINL
PDB (RSDB)6DRM   
PDB Europe6DRM   
PDB (PDBSum)6DRM   
PDB (IMB)6DRM   
Structural Biology KnowledgeBase6DRM   
SCOP (Structural Classification of Proteins)6DRM   
CATH (Classification of proteins structures)6DRM   
SuperfamilyQ9NUU6
AlphaFold pdb e-kbQ9NUU6   
Human Protein Atlas [tissue]ENSG00000145569-OTULINL [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9NUU6
IntAct (EBI)Q9NUU6
BioGRIDOTULINL
STRING (EMBL)OTULINL
ZODIACOTULINL
Ontologies - Pathways
QuickGOQ9NUU6
Ontology : AmiGOprotein binding  nuclear envelope  cytoplasm  protein deubiquitination  ubiquitin-like protein-specific protease activity  extrinsic component of endoplasmic reticulum membrane  ubiquitin binding  
Ontology : EGO-EBIprotein binding  nuclear envelope  cytoplasm  protein deubiquitination  ubiquitin-like protein-specific protease activity  extrinsic component of endoplasmic reticulum membrane  ubiquitin binding  
NDEx NetworkOTULINL
Atlas of Cancer Signalling NetworkOTULINL
Wikipedia pathwaysOTULINL
Orthology - Evolution
OrthoDB54491
GeneTree (enSembl)ENSG00000145569
Phylogenetic Trees/Animal Genes : TreeFamOTULINL
Homologs : HomoloGeneOTULINL
Homology/Alignments : Family Browser (UCSC)OTULINL
Gene fusions - Rearrangements
Fusion : QuiverOTULINL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOTULINL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OTULINL
dbVarOTULINL
ClinVarOTULINL
MonarchOTULINL
1000_GenomesOTULINL 
Exome Variant ServerOTULINL
GNOMAD BrowserENSG00000145569
Varsome BrowserOTULINL
ACMGOTULINL variants
VarityQ9NUU6
Genomic Variants (DGV)OTULINL [DGVbeta]
DECIPHEROTULINL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOTULINL 
Mutations
ICGC Data PortalOTULINL 
TCGA Data PortalOTULINL 
Broad Tumor PortalOTULINL
OASIS PortalOTULINL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOTULINL  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOTULINL
Mutations and Diseases : HGMDOTULINL
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaOTULINL
DgiDB (Drug Gene Interaction Database)OTULINL
DoCM (Curated mutations)OTULINL
CIViC (Clinical Interpretations of Variants in Cancer)OTULINL
Cancer3DOTULINL
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOTULINL
MedgenOTULINL
Genetic Testing Registry OTULINL
NextProtQ9NUU6 [Medical]
GENETestsOTULINL
Target ValidationOTULINL
Huge Navigator OTULINL [HugePedia]
ClinGenOTULINL
Clinical trials, drugs, therapy
MyCancerGenomeOTULINL
Protein Interactions : CTDOTULINL
Pharm GKB GenePA142671788
PharosQ9NUU6
Clinical trialOTULINL
Miscellaneous
canSAR (ICR)OTULINL
HarmonizomeOTULINL
DataMed IndexOTULINL
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOTULINL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:15:13 CEST 2021

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