Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OTX2-AS1 (OTX2 antisense RNA 1 (head to head))

Identity

Alias_namesOTX2 antisense RNA 1 (non-protein coding)
OTX2 antisense RNA 1
Alias_symbol (synonym)OTX2OS1
Other alias
HGNC (Hugo) OTX2-AS1
LocusID (NCBI) 100309464
Atlas_Id 71587
Location 14q22.3  [Link to chromosome band 14q22]
Location_base_pair Starts at 56813158 and ends at 56931308 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OTX2-AS1   43906
Cards
Entrez_Gene (NCBI)OTX2-AS1  100309464  OTX2 antisense RNA 1 (head to head)
AliasesOTX2OS1
GeneCards (Weizmann)OTX2-AS1
Ensembl hg19 (Hinxton)ENSG00000248550 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248550 [Gene_View]  chr14:56813158-56931308 [Contig_View]  OTX2-AS1 [Vega]
ICGC DataPortalENSG00000248550
TCGA cBioPortalOTX2-AS1
AceView (NCBI)OTX2-AS1
Genatlas (Paris)OTX2-AS1
WikiGenes100309464
SOURCE (Princeton)OTX2-AS1
Genetics Home Reference (NIH)OTX2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)OTX2-AS1  -     chr14:56813158-56931308 +  14q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OTX2-AS1  -     14q22.3   [Description]    (hg19-Feb_2009)
EnsemblOTX2-AS1 - 14q22.3 [CytoView hg19]  OTX2-AS1 - 14q22.3 [CytoView hg38]
Mapping of homologs : NCBIOTX2-AS1 [Mapview hg19]  OTX2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB593038 AB593039 AB593040 AB593041 BC041486
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OTX2-AS1
Cluster EST : UnigeneHs.637962 [ NCBI ]
CGAP (NCI)Hs.637962
Alternative Splicing GalleryENSG00000248550
Gene ExpressionOTX2-AS1 [ NCBI-GEO ]   OTX2-AS1 [ EBI - ARRAY_EXPRESS ]   OTX2-AS1 [ SEEK ]   OTX2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)OTX2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100309464
GTEX Portal (Tissue expression)OTX2-AS1
Human Protein AtlasENSG00000248550-OTX2-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OTX2-AS1
DMDM Disease mutations100309464
Blocks (Seattle)OTX2-AS1
Human Protein Atlas [tissue]ENSG00000248550-OTX2-AS1 [tissue]
IPIIPI00921190   
Protein Interaction databases
FunCoupENSG00000248550
BioGRIDOTX2-AS1
STRING (EMBL)OTX2-AS1
ZODIACOTX2-AS1
Ontologies - Pathways
Huge Navigator OTX2-AS1 [HugePedia]
snp3D : Map Gene to Disease100309464
BioCentury BCIQOTX2-AS1
ClinGenOTX2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100309464
Clinical trialOTX2-AS1
Miscellaneous
canSAR (ICR)OTX2-AS1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOTX2-AS1
EVEXOTX2-AS1
GoPubMedOTX2-AS1
iHOPOTX2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:30:16 CET 2017

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