Atlas of Genetics and Cytogenetics in Oncology and Haematology

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OVAAL (ovarian adenocarcinoma amplified long non-coding RNA)

Identity

Alias (NCBI)LINC01131
OVAL
HGNC (Hugo) OVAAL
HGNC Alias symbLINC01131
OVAL
HGNC Alias namelong intergenic non-protein coding RNA 1131
 ovarian adenocarcinoma amplified lncRNA
LocusID (NCBI) 148756
Atlas_Id 54834
Location 1q25.3  [Link to chromosome band 1q25]
Location_base_pair Starts at 180558974 and ends at 180566518 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OVAAL   49422
Cards
Entrez_Gene (NCBI)OVAAL  148756  ovarian adenocarcinoma amplified long non-coding RNA
AliasesLINC01131; OVAL
GeneCards (Weizmann)OVAAL
Ensembl hg19 (Hinxton)ENSG00000236719 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236719 [Gene_View]  ENSG00000236719 [Sequence]  chr1:180558974-180566518 [Contig_View]  OVAAL [Vega]
ICGC DataPortalENSG00000236719
TCGA cBioPortalOVAAL
AceView (NCBI)OVAAL
Genatlas (Paris)OVAAL
WikiGenes148756
SOURCE (Princeton)OVAAL
Genetics Home Reference (NIH)OVAAL
Genomic and cartography
GoldenPath hg38 (UCSC)OVAAL  -     chr1:180558974-180566518 +  1q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OVAAL  -     1q25.3   [Description]    (hg19-Feb_2009)
GoldenPathOVAAL - 1q25.3 [CytoView hg19]  OVAAL - 1q25.3 [CytoView hg38]
ImmunoBaseENSG00000236719
genome Data Viewer NCBIOVAAL [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC036830 BC044260 BC063624 BC107121 BC107122
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OVAAL
Alternative Splicing GalleryENSG00000236719
Gene ExpressionOVAAL [ NCBI-GEO ]   OVAAL [ EBI - ARRAY_EXPRESS ]   OVAAL [ SEEK ]   OVAAL [ MEM ]
Gene Expression Viewer (FireBrowse)OVAAL [ Firebrowse - Broad ]
GenevisibleExpression of OVAAL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148756
GTEX Portal (Tissue expression)OVAAL
Human Protein AtlasENSG00000236719-OVAAL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OVAAL
DMDM Disease mutations148756
Blocks (Seattle)OVAAL
Human Protein Atlas [tissue]ENSG00000236719-OVAAL [tissue]
Protein Interaction databases
FunCoupENSG00000236719
BioGRIDOVAAL
STRING (EMBL)OVAAL
ZODIACOVAAL
Ontologies - Pathways
Huge Navigator OVAAL [HugePedia]
snp3D : Map Gene to Disease148756
BioCentury BCIQOVAAL
ClinGenOVAAL
Clinical trials, drugs, therapy
Protein Interactions : CTD148756
Clinical trialOVAAL
Miscellaneous
canSAR (ICR)OVAAL (select the gene name)
HarmonizomeOVAAL
DataMed IndexOVAAL
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOVAAL
EVEXOVAAL
GoPubMedOVAAL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Jul 16 15:28:23 CEST 2020
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