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OVCA2 (ovarian tumor suppressor candidate 2)

Identity

Other alias-
HGNC (Hugo) OVCA2
LocusID (NCBI) 124641
Atlas_Id 41621
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 1945277 and ends at 1946725 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HIC1 (17p13.3) / OVCA2 (17p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OVCA2   24203
Cards
Entrez_Gene (NCBI)OVCA2  124641  ovarian tumor suppressor candidate 2
Aliases
GeneCards (Weizmann)OVCA2
Ensembl hg19 (Hinxton)ENSG00000262664 [Gene_View]  chr17:1945277-1946725 [Contig_View]  OVCA2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000262664 [Gene_View]  chr17:1945277-1946725 [Contig_View]  OVCA2 [Vega]
ICGC DataPortalENSG00000262664
TCGA cBioPortalOVCA2
AceView (NCBI)OVCA2
Genatlas (Paris)OVCA2
WikiGenes124641
SOURCE (Princeton)OVCA2
Genetics Home Reference (NIH)OVCA2
Genomic and cartography
GoldenPath hg19 (UCSC)OVCA2  -     chr17:1945277-1946725 +  17p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OVCA2  -     17p13.3   [Description]    (hg38-Dec_2013)
EnsemblOVCA2 - 17p13.3 [CytoView hg19]  OVCA2 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIOVCA2 [Mapview hg19]  OVCA2 [Mapview hg38]
OMIM607896   
Gene and transcription
Genbank (Entrez)AF073528 AF321875 BC040696 BC041170 CB137429
RefSeq transcript (Entrez)NM_080822
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)OVCA2
Cluster EST : UnigeneHs.513856 [ NCBI ]
CGAP (NCI)Hs.513856
Alternative Splicing GalleryENSG00000262664
Gene ExpressionOVCA2 [ NCBI-GEO ]   OVCA2 [ EBI - ARRAY_EXPRESS ]   OVCA2 [ SEEK ]   OVCA2 [ MEM ]
Gene Expression Viewer (FireBrowse)OVCA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124641
GTEX Portal (Tissue expression)OVCA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WZ82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WZ82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WZ82
Splice isoforms : SwissVarQ8WZ82
PhosPhoSitePlusQ8WZ82
Domains : Interpro (EBI)AB_hydrolase    Serine_hydrolase_FSH   
Domain families : Pfam (Sanger)FSH1 (PF03959)   
Domain families : Pfam (NCBI)pfam03959   
Conserved Domain (NCBI)OVCA2
DMDM Disease mutations124641
Blocks (Seattle)OVCA2
SuperfamilyQ8WZ82
Human Protein AtlasENSG00000262664
Peptide AtlasQ8WZ82
HPRD07437
IPIIPI00103884   
Protein Interaction databases
DIP (DOE-UCLA)Q8WZ82
IntAct (EBI)Q8WZ82
FunCoupENSG00000262664
BioGRIDOVCA2
STRING (EMBL)OVCA2
ZODIACOVCA2
Ontologies - Pathways
QuickGOQ8WZ82
Ontology : AmiGOnucleus  cytoplasm  hydrolase activity  response to retinoic acid  
Ontology : EGO-EBInucleus  cytoplasm  hydrolase activity  response to retinoic acid  
NDEx NetworkOVCA2
Atlas of Cancer Signalling NetworkOVCA2
Wikipedia pathwaysOVCA2
Orthology - Evolution
OrthoDB124641
GeneTree (enSembl)ENSG00000262664
Phylogenetic Trees/Animal Genes : TreeFamOVCA2
HOVERGENQ8WZ82
HOGENOMQ8WZ82
Homologs : HomoloGeneOVCA2
Homology/Alignments : Family Browser (UCSC)OVCA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOVCA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OVCA2
dbVarOVCA2
ClinVarOVCA2
1000_GenomesOVCA2 
Exome Variant ServerOVCA2
ExAC (Exome Aggregation Consortium)OVCA2 (select the gene name)
Genetic variants : HAPMAP124641
Genomic Variants (DGV)OVCA2 [DGVbeta]
DECIPHER (Syndromes)17:1945277-1946725  ENSG00000262664
CONAN: Copy Number AnalysisOVCA2 
Mutations
ICGC Data PortalOVCA2 
TCGA Data PortalOVCA2 
Broad Tumor PortalOVCA2
OASIS PortalOVCA2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOVCA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OVCA2
DgiDB (Drug Gene Interaction Database)OVCA2
DoCM (Curated mutations)OVCA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OVCA2 (select a term)
intoGenOVCA2
Cancer3DOVCA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607896   
Orphanet
MedgenOVCA2
Genetic Testing Registry OVCA2
NextProtQ8WZ82 [Medical]
TSGene124641
GENETestsOVCA2
Huge Navigator OVCA2 [HugePedia]
snp3D : Map Gene to Disease124641
BioCentury BCIQOVCA2
ClinGenOVCA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124641
Chemical/Pharm GKB GenePA165432281
Clinical trialOVCA2
Miscellaneous
canSAR (ICR)OVCA2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOVCA2
EVEXOVCA2
GoPubMedOVCA2
iHOPOVCA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:20:03 CET 2017

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