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OVCH1 (ovochymase 1)

Identity

Alias_symbol (synonym)OVCH
Other alias
HGNC (Hugo) OVCH1
LocusID (NCBI) 341350
Atlas_Id 71588
Location 12p11.22  [Link to chromosome band 12p11]
Location_base_pair Starts at 29427556 and ends at 29497686 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OVCH1   23080
Cards
Entrez_Gene (NCBI)OVCH1  341350  ovochymase 1
AliasesOVCH
GeneCards (Weizmann)OVCH1
Ensembl hg19 (Hinxton)ENSG00000187950 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187950 [Gene_View]  chr12:29427556-29497686 [Contig_View]  OVCH1 [Vega]
ICGC DataPortalENSG00000187950
TCGA cBioPortalOVCH1
AceView (NCBI)OVCH1
Genatlas (Paris)OVCH1
WikiGenes341350
SOURCE (Princeton)OVCH1
Genetics Home Reference (NIH)OVCH1
Genomic and cartography
GoldenPath hg38 (UCSC)OVCH1  -     chr12:29427556-29497686 -  12p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OVCH1  -     12p11.22   [Description]    (hg19-Feb_2009)
EnsemblOVCH1 - 12p11.22 [CytoView hg19]  OVCH1 - 12p11.22 [CytoView hg38]
Mapping of homologs : NCBIOVCH1 [Mapview hg19]  OVCH1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC152894 BC156869 BN000128
RefSeq transcript (Entrez)NM_183378
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OVCH1
Cluster EST : UnigeneHs.674588 [ NCBI ]
CGAP (NCI)Hs.674588
Alternative Splicing GalleryENSG00000187950
Gene ExpressionOVCH1 [ NCBI-GEO ]   OVCH1 [ EBI - ARRAY_EXPRESS ]   OVCH1 [ SEEK ]   OVCH1 [ MEM ]
Gene Expression Viewer (FireBrowse)OVCH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)341350
GTEX Portal (Tissue expression)OVCH1
Human Protein AtlasENSG00000187950-OVCH1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTY7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTY7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTY7
Splice isoforms : SwissVarQ7RTY7
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   
PhosPhoSitePlusQ7RTY7
Domaine pattern : Prosite (Expaxy)CUB (PS01180)    TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)CUB_dom    Peptidase_S1_PA    Peptidase_S1A    Trypsin_dom    TRYPSIN_HIS    TRYPSIN_SER   
Domain families : Pfam (Sanger)CUB (PF00431)    Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00431    pfam00089   
Domain families : Smart (EMBL)CUB (SM00042)  Tryp_SPc (SM00020)  
Conserved Domain (NCBI)OVCH1
DMDM Disease mutations341350
Blocks (Seattle)OVCH1
SuperfamilyQ7RTY7
Human Protein Atlas [tissue]ENSG00000187950-OVCH1 [tissue]
Peptide AtlasQ7RTY7
HPRD07138
IPIIPI00339217   IPI01011383   IPI01009298   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTY7
IntAct (EBI)Q7RTY7
FunCoupENSG00000187950
BioGRIDOVCH1
STRING (EMBL)OVCH1
ZODIACOVCH1
Ontologies - Pathways
QuickGOQ7RTY7
Ontology : AmiGOserine-type endopeptidase activity  extracellular region  proteolysis  metal ion binding  
Ontology : EGO-EBIserine-type endopeptidase activity  extracellular region  proteolysis  metal ion binding  
NDEx NetworkOVCH1
Atlas of Cancer Signalling NetworkOVCH1
Wikipedia pathwaysOVCH1
Orthology - Evolution
OrthoDB341350
GeneTree (enSembl)ENSG00000187950
Phylogenetic Trees/Animal Genes : TreeFamOVCH1
HOVERGENQ7RTY7
HOGENOMQ7RTY7
Homologs : HomoloGeneOVCH1
Homology/Alignments : Family Browser (UCSC)OVCH1
Gene fusions - Rearrangements
Tumor Fusion PortalOVCH1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOVCH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OVCH1
dbVarOVCH1
ClinVarOVCH1
1000_GenomesOVCH1 
Exome Variant ServerOVCH1
ExAC (Exome Aggregation Consortium)ENSG00000187950
GNOMAD BrowserENSG00000187950
Genetic variants : HAPMAP341350
Genomic Variants (DGV)OVCH1 [DGVbeta]
DECIPHEROVCH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOVCH1 
Mutations
ICGC Data PortalOVCH1 
TCGA Data PortalOVCH1 
Broad Tumor PortalOVCH1
OASIS PortalOVCH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOVCH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOVCH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OVCH1
DgiDB (Drug Gene Interaction Database)OVCH1
DoCM (Curated mutations)OVCH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OVCH1 (select a term)
intoGenOVCH1
Cancer3DOVCH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOVCH1
MedgenOVCH1
Genetic Testing Registry OVCH1
NextProtQ7RTY7 [Medical]
TSGene341350
GENETestsOVCH1
Target ValidationOVCH1
Huge Navigator OVCH1 [HugePedia]
snp3D : Map Gene to Disease341350
BioCentury BCIQOVCH1
ClinGenOVCH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD341350
Chemical/Pharm GKB GenePA134910581
Clinical trialOVCH1
Miscellaneous
canSAR (ICR)OVCH1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOVCH1
EVEXOVCH1
GoPubMedOVCH1
iHOPOVCH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:27:09 CET 2017

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