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OVCH2 (ovochymase 2 (gene/pseudogene))

Identity

Alias_namesovochymase 2
Alias_symbol (synonym)OVTN
Other alias
HGNC (Hugo) OVCH2
LocusID (NCBI) 341277
Atlas_Id 71590
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 7689924 and ends at 7706394 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LOC283299 (11p15.4) / OVCH2 (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OVCH2   29970
Cards
Entrez_Gene (NCBI)OVCH2  341277  ovochymase 2 (gene/pseudogene)
AliasesOVTN
GeneCards (Weizmann)OVCH2
Ensembl hg19 (Hinxton)ENSG00000183378 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183378 [Gene_View]  chr11:7689924-7706394 [Contig_View]  OVCH2 [Vega]
ICGC DataPortalENSG00000183378
TCGA cBioPortalOVCH2
AceView (NCBI)OVCH2
Genatlas (Paris)OVCH2
WikiGenes341277
SOURCE (Princeton)OVCH2
Genetics Home Reference (NIH)OVCH2
Genomic and cartography
GoldenPath hg38 (UCSC)OVCH2  -     chr11:7689924-7706394 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OVCH2  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOVCH2 - 11p15.4 [CytoView hg19]  OVCH2 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOVCH2 [Mapview hg19]  OVCH2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW271430 BC160173
RefSeq transcript (Entrez)NM_198185
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OVCH2
Cluster EST : UnigeneHs.532475 [ NCBI ]
CGAP (NCI)Hs.532475
Alternative Splicing GalleryENSG00000183378
Gene ExpressionOVCH2 [ NCBI-GEO ]   OVCH2 [ EBI - ARRAY_EXPRESS ]   OVCH2 [ SEEK ]   OVCH2 [ MEM ]
Gene Expression Viewer (FireBrowse)OVCH2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)341277
GTEX Portal (Tissue expression)OVCH2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTZ1
Splice isoforms : SwissVarQ7RTZ1
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   
PhosPhoSitePlusQ7RTZ1
Domaine pattern : Prosite (Expaxy)CUB (PS01180)    TRYPSIN_DOM (PS50240)    TRYPSIN_HIS (PS00134)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)CUB_dom    Peptidase_S1_PA    Peptidase_S1A    Trypsin_dom    TRYPSIN_HIS    TRYPSIN_SER   
Domain families : Pfam (Sanger)CUB (PF00431)    Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00431    pfam00089   
Domain families : Smart (EMBL)CUB (SM00042)  Tryp_SPc (SM00020)  
Conserved Domain (NCBI)OVCH2
DMDM Disease mutations341277
Blocks (Seattle)OVCH2
SuperfamilyQ7RTZ1
Human Protein AtlasENSG00000183378
Peptide AtlasQ7RTZ1
HPRD07139
IPIIPI01017894   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTZ1
IntAct (EBI)Q7RTZ1
FunCoupENSG00000183378
BioGRIDOVCH2
STRING (EMBL)OVCH2
ZODIACOVCH2
Ontologies - Pathways
QuickGOQ7RTZ1
Ontology : AmiGOserine-type endopeptidase activity  extracellular region  proteolysis  metal ion binding  
Ontology : EGO-EBIserine-type endopeptidase activity  extracellular region  proteolysis  metal ion binding  
NDEx NetworkOVCH2
Atlas of Cancer Signalling NetworkOVCH2
Wikipedia pathwaysOVCH2
Orthology - Evolution
OrthoDB341277
GeneTree (enSembl)ENSG00000183378
Phylogenetic Trees/Animal Genes : TreeFamOVCH2
HOVERGENQ7RTZ1
HOGENOMQ7RTZ1
Homologs : HomoloGeneOVCH2
Homology/Alignments : Family Browser (UCSC)OVCH2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOVCH2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OVCH2
dbVarOVCH2
ClinVarOVCH2
1000_GenomesOVCH2 
Exome Variant ServerOVCH2
ExAC (Exome Aggregation Consortium)OVCH2 (select the gene name)
Genetic variants : HAPMAP341277
Genomic Variants (DGV)OVCH2 [DGVbeta]
DECIPHEROVCH2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOVCH2 
Mutations
ICGC Data PortalOVCH2 
TCGA Data PortalOVCH2 
Broad Tumor PortalOVCH2
OASIS PortalOVCH2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOVCH2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OVCH2
DgiDB (Drug Gene Interaction Database)OVCH2
DoCM (Curated mutations)OVCH2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OVCH2 (select a term)
intoGenOVCH2
Cancer3DOVCH2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOVCH2
Genetic Testing Registry OVCH2
NextProtQ7RTZ1 [Medical]
TSGene341277
GENETestsOVCH2
Target ValidationOVCH2
Huge Navigator OVCH2 [HugePedia]
snp3D : Map Gene to Disease341277
BioCentury BCIQOVCH2
ClinGenOVCH2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD341277
Chemical/Pharm GKB GenePA142671212
Clinical trialOVCH2
Miscellaneous
canSAR (ICR)OVCH2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOVCH2
EVEXOVCH2
GoPubMedOVCH2
iHOPOVCH2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:47 CEST 2017

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