Atlas of Genetics and Cytogenetics in Oncology and Haematology

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OVGP1 (oviductal glycoprotein 1)

Identity

Alias (NCBI)CHIT5
EGP
MUC9
OGP
HGNC (Hugo) OVGP1
HGNC Alias symbCHIT5
HGNC Alias nameoviductin
HGNC Previous nameMUC9
HGNC Previous namemucin 9
 oviductal glycoprotein 1, 120kDa
LocusID (NCBI) 5016
Atlas_Id 46163
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 111414319 and ends at 111427735 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OVGP1   8524
Cards
Entrez_Gene (NCBI)OVGP1    oviductal glycoprotein 1
AliasesCHIT5; EGP; MUC9; OGP
GeneCards (Weizmann)OVGP1
Ensembl hg19 (Hinxton)ENSG00000085465 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000085465 [Gene_View]  ENSG00000085465 [Sequence]  chr1:111414319-111427735 [Contig_View]  OVGP1 [Vega]
ICGC DataPortalENSG00000085465
TCGA cBioPortalOVGP1
AceView (NCBI)OVGP1
Genatlas (Paris)OVGP1
SOURCE (Princeton)OVGP1
Genetics Home Reference (NIH)OVGP1
Genomic and cartography
GoldenPath hg38 (UCSC)OVGP1  -     chr1:111414319-111427735 -  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OVGP1  -     1p13.2   [Description]    (hg19-Feb_2009)
GoldenPathOVGP1 - 1p13.2 [CytoView hg19]  OVGP1 - 1p13.2 [CytoView hg38]
ImmunoBaseENSG00000085465
genome Data Viewer NCBIOVGP1 [Mapview hg19]  
OMIM603578   
Gene and transcription
Genbank (Entrez)AA909093 AB208783 AK295207 AK298757 AK301726
RefSeq transcript (Entrez)NM_002557
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OVGP1
Alternative Splicing GalleryENSG00000085465
Gene ExpressionOVGP1 [ NCBI-GEO ]   OVGP1 [ EBI - ARRAY_EXPRESS ]   OVGP1 [ SEEK ]   OVGP1 [ MEM ]
Gene Expression Viewer (FireBrowse)OVGP1 [ Firebrowse - Broad ]
GenevisibleExpression of OVGP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5016
GTEX Portal (Tissue expression)OVGP1
Human Protein AtlasENSG00000085465-OVGP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12889   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12889  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12889
Splice isoforms : SwissVarQ12889
PhosPhoSitePlusQ12889
Domaine pattern : Prosite (Expaxy)GH18_2 (PS51910)   
Domains : Interpro (EBI)Chitinase_II    Chitinase_insertion_sf    Glyco_hydro18_cat    Glycoside_hydrolase_SF   
Domain families : Pfam (Sanger)Glyco_hydro_18 (PF00704)   
Domain families : Pfam (NCBI)pfam00704   
Domain families : Smart (EMBL)Glyco_18 (SM00636)  
Conserved Domain (NCBI)OVGP1
Blocks (Seattle)OVGP1
SuperfamilyQ12889
Human Protein Atlas [tissue]ENSG00000085465-OVGP1 [tissue]
Peptide AtlasQ12889
HPRD04658
IPIIPI00029779   IPI00910374   IPI01009988   IPI00909313   IPI00844591   
Protein Interaction databases
DIP (DOE-UCLA)Q12889
IntAct (EBI)Q12889
BioGRIDOVGP1
STRING (EMBL)OVGP1
ZODIACOVGP1
Ontologies - Pathways
QuickGOQ12889
Ontology : AmiGOchitinase activity  extracellular region  cytosol  carbohydrate metabolic process  chitin catabolic process  binding of sperm to zona pellucida  female pregnancy  chitin binding  transport vesicle  egg coat  perivitelline space  negative regulation of binding of sperm to zona pellucida  
Ontology : EGO-EBIchitinase activity  extracellular region  cytosol  carbohydrate metabolic process  chitin catabolic process  binding of sperm to zona pellucida  female pregnancy  chitin binding  transport vesicle  egg coat  perivitelline space  negative regulation of binding of sperm to zona pellucida  
NDEx NetworkOVGP1
Atlas of Cancer Signalling NetworkOVGP1
Wikipedia pathwaysOVGP1
Orthology - Evolution
OrthoDB5016
GeneTree (enSembl)ENSG00000085465
Phylogenetic Trees/Animal Genes : TreeFamOVGP1
HOGENOMQ12889
Homologs : HomoloGeneOVGP1
Homology/Alignments : Family Browser (UCSC)OVGP1
Gene fusions - Rearrangements
Fusion : QuiverOVGP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOVGP1 [hg38]
dbVarOVGP1
ClinVarOVGP1
MonarchOVGP1
1000_GenomesOVGP1 
Exome Variant ServerOVGP1
GNOMAD BrowserENSG00000085465
Varsome BrowserOVGP1
Genomic Variants (DGV)OVGP1 [DGVbeta]
DECIPHEROVGP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOVGP1 
Mutations
ICGC Data PortalOVGP1 
TCGA Data PortalOVGP1 
Broad Tumor PortalOVGP1
OASIS PortalOVGP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOVGP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOVGP1
Mutations and Diseases : HGMDOVGP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OVGP1
DgiDB (Drug Gene Interaction Database)OVGP1
DoCM (Curated mutations)OVGP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OVGP1 (select a term)
intoGenOVGP1
Cancer3DOVGP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603578   
Orphanet
DisGeNETOVGP1
MedgenOVGP1
Genetic Testing Registry OVGP1
NextProtQ12889 [Medical]
GENETestsOVGP1
Target ValidationOVGP1
Huge Navigator OVGP1 [HugePedia]
ClinGenOVGP1
Clinical trials, drugs, therapy
MyCancerGenomeOVGP1
Protein Interactions : CTD
Pharm GKB GenePA32852
PharosQ12889
Clinical trialOVGP1
Miscellaneous
canSAR (ICR)OVGP1 (select the gene name)
HarmonizomeOVGP1
DataMed IndexOVGP1
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOVGP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:30:08 CET 2021
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