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OVOL1 (ovo like zinc finger 1)

Identity

Alias_namesovo (Drosophila) homolog-like 1
ovo-like 1(Drosophila)
ovo like zinc finger 1
Alias_symbol (synonym)HOVO1
Other alias
HGNC (Hugo) OVOL1
LocusID (NCBI) 5017
Atlas_Id 55015
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65554505 and ends at 65564690 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FNTA (8p11.21) / OVOL1 (11q13.1)FNTA 8p11.21 / OVOL1 11q13.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OVOL1   8525
Cards
Entrez_Gene (NCBI)OVOL1  5017  ovo like zinc finger 1
AliasesHOVO1
GeneCards (Weizmann)OVOL1
Ensembl hg19 (Hinxton)ENSG00000172818 [Gene_View]  chr11:65554505-65564690 [Contig_View]  OVOL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172818 [Gene_View]  chr11:65554505-65564690 [Contig_View]  OVOL1 [Vega]
ICGC DataPortalENSG00000172818
TCGA cBioPortalOVOL1
AceView (NCBI)OVOL1
Genatlas (Paris)OVOL1
WikiGenes5017
SOURCE (Princeton)OVOL1
Genetics Home Reference (NIH)OVOL1
Genomic and cartography
GoldenPath hg19 (UCSC)OVOL1  -     chr11:65554505-65564690 +  11q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OVOL1  -     11q13.1   [Description]    (hg38-Dec_2013)
EnsemblOVOL1 - 11q13.1 [CytoView hg19]  OVOL1 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIOVOL1 [Mapview hg19]  OVOL1 [Mapview hg38]
OMIM602313   
Gene and transcription
Genbank (Entrez)AF016045 AK291711 AL702845 AW207443 BC043146
RefSeq transcript (Entrez)NM_004561
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)OVOL1
Cluster EST : UnigeneHs.134434 [ NCBI ]
CGAP (NCI)Hs.134434
Alternative Splicing GalleryENSG00000172818
Gene ExpressionOVOL1 [ NCBI-GEO ]   OVOL1 [ EBI - ARRAY_EXPRESS ]   OVOL1 [ SEEK ]   OVOL1 [ MEM ]
Gene Expression Viewer (FireBrowse)OVOL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5017
GTEX Portal (Tissue expression)OVOL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14753   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14753  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14753
Splice isoforms : SwissVarO14753
PhosPhoSitePlusO14753
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    TF_Ovo-like    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)OVOL1
DMDM Disease mutations5017
Blocks (Seattle)OVOL1
SuperfamilyO14753
Human Protein AtlasENSG00000172818
Peptide AtlasO14753
HPRD09080
IPIIPI00023663   IPI00983233   
Protein Interaction databases
DIP (DOE-UCLA)O14753
IntAct (EBI)O14753
FunCoupENSG00000172818
BioGRIDOVOL1
STRING (EMBL)OVOL1
ZODIACOVOL1
Ontologies - Pathways
QuickGOO14753
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  kidney development  nucleus  transcription from RNA polymerase II promoter  spermatogenesis  mesoderm development  epidermis development  skin development  metal ion binding  germline cell cycle switching, mitotic to meiotic cell cycle  negative regulation of meiotic cell cycle phase transition  negative regulation of stem cell proliferation  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  kidney development  nucleus  transcription from RNA polymerase II promoter  spermatogenesis  mesoderm development  epidermis development  skin development  metal ion binding  germline cell cycle switching, mitotic to meiotic cell cycle  negative regulation of meiotic cell cycle phase transition  negative regulation of stem cell proliferation  
NDEx NetworkOVOL1
Atlas of Cancer Signalling NetworkOVOL1
Wikipedia pathwaysOVOL1
Orthology - Evolution
OrthoDB5017
GeneTree (enSembl)ENSG00000172818
Phylogenetic Trees/Animal Genes : TreeFamOVOL1
HOVERGENO14753
HOGENOMO14753
Homologs : HomoloGeneOVOL1
Homology/Alignments : Family Browser (UCSC)OVOL1
Gene fusions - Rearrangements
Fusion : MitelmanFNTA/OVOL1 [8p11.21/11q13.1]  [t(8;11)(p11;q13)]  
Fusion: TCGAFNTA 8p11.21 OVOL1 11q13.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOVOL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OVOL1
dbVarOVOL1
ClinVarOVOL1
1000_GenomesOVOL1 
Exome Variant ServerOVOL1
ExAC (Exome Aggregation Consortium)OVOL1 (select the gene name)
Genetic variants : HAPMAP5017
Genomic Variants (DGV)OVOL1 [DGVbeta]
DECIPHER (Syndromes)11:65554505-65564690  ENSG00000172818
CONAN: Copy Number AnalysisOVOL1 
Mutations
ICGC Data PortalOVOL1 
TCGA Data PortalOVOL1 
Broad Tumor PortalOVOL1
OASIS PortalOVOL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOVOL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOVOL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OVOL1
DgiDB (Drug Gene Interaction Database)OVOL1
DoCM (Curated mutations)OVOL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OVOL1 (select a term)
intoGenOVOL1
Cancer3DOVOL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602313   
Orphanet
MedgenOVOL1
Genetic Testing Registry OVOL1
NextProtO14753 [Medical]
TSGene5017
GENETestsOVOL1
Huge Navigator OVOL1 [HugePedia]
snp3D : Map Gene to Disease5017
BioCentury BCIQOVOL1
ClinGenOVOL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5017
Chemical/Pharm GKB GenePA32853
Clinical trialOVOL1
Miscellaneous
canSAR (ICR)OVOL1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOVOL1
EVEXOVOL1
GoPubMedOVOL1
iHOPOVOL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:20:04 CET 2017

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