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OVOL3 (ovo like zinc finger 3)

Identity

Alias_namesovo-like 3 (Drosophila)
Alias_symbol (synonym)HOVO3
Other alias
HGNC (Hugo) OVOL3
LocusID (NCBI) 728361
Atlas_Id 71594
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36111203 and ends at 36113711 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OVOL3   14186
Cards
Entrez_Gene (NCBI)OVOL3  728361  ovo like zinc finger 3
AliasesHOVO3
GeneCards (Weizmann)OVOL3
Ensembl hg19 (Hinxton)ENSG00000105261 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105261 [Gene_View]  chr19:36111203-36113711 [Contig_View]  OVOL3 [Vega]
ICGC DataPortalENSG00000105261
TCGA cBioPortalOVOL3
AceView (NCBI)OVOL3
Genatlas (Paris)OVOL3
WikiGenes728361
SOURCE (Princeton)OVOL3
Genetics Home Reference (NIH)OVOL3
Genomic and cartography
GoldenPath hg38 (UCSC)OVOL3  -     chr19:36111203-36113711 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OVOL3  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblOVOL3 - 19q13.12 [CytoView hg19]  OVOL3 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIOVOL3 [Mapview hg19]  OVOL3 [Mapview hg38]
OMIM616442   
Gene and transcription
Genbank (Entrez)AI206718
RefSeq transcript (Entrez)NM_001270948 NM_001302757
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OVOL3
Cluster EST : UnigeneHs.143920 [ NCBI ]
CGAP (NCI)Hs.143920
Alternative Splicing GalleryENSG00000105261
Gene ExpressionOVOL3 [ NCBI-GEO ]   OVOL3 [ EBI - ARRAY_EXPRESS ]   OVOL3 [ SEEK ]   OVOL3 [ MEM ]
Gene Expression Viewer (FireBrowse)OVOL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728361
GTEX Portal (Tissue expression)OVOL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00110   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00110  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00110
Splice isoforms : SwissVarO00110
PhosPhoSitePlusO00110
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)OVOL3
DMDM Disease mutations728361
Blocks (Seattle)OVOL3
SuperfamilyO00110
Human Protein AtlasENSG00000105261
Peptide AtlasO00110
IPIIPI00878672   
Protein Interaction databases
DIP (DOE-UCLA)O00110
IntAct (EBI)O00110
FunCoupENSG00000105261
BioGRIDOVOL3
STRING (EMBL)OVOL3
ZODIACOVOL3
Ontologies - Pathways
QuickGOO00110
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  nucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkOVOL3
Atlas of Cancer Signalling NetworkOVOL3
Wikipedia pathwaysOVOL3
Orthology - Evolution
OrthoDB728361
GeneTree (enSembl)ENSG00000105261
Phylogenetic Trees/Animal Genes : TreeFamOVOL3
HOVERGENO00110
HOGENOMO00110
Homologs : HomoloGeneOVOL3
Homology/Alignments : Family Browser (UCSC)OVOL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOVOL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OVOL3
dbVarOVOL3
ClinVarOVOL3
1000_GenomesOVOL3 
Exome Variant ServerOVOL3
ExAC (Exome Aggregation Consortium)OVOL3 (select the gene name)
Genetic variants : HAPMAP728361
Genomic Variants (DGV)OVOL3 [DGVbeta]
DECIPHEROVOL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOVOL3 
Mutations
ICGC Data PortalOVOL3 
TCGA Data PortalOVOL3 
Broad Tumor PortalOVOL3
OASIS PortalOVOL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOVOL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOVOL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OVOL3
DgiDB (Drug Gene Interaction Database)OVOL3
DoCM (Curated mutations)OVOL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OVOL3 (select a term)
intoGenOVOL3
Cancer3DOVOL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616442   
Orphanet
MedgenOVOL3
Genetic Testing Registry OVOL3
NextProtO00110 [Medical]
TSGene728361
GENETestsOVOL3
Target ValidationOVOL3
Huge Navigator OVOL3 [HugePedia]
snp3D : Map Gene to Disease728361
BioCentury BCIQOVOL3
ClinGenOVOL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728361
Chemical/Pharm GKB GenePA166048946
Clinical trialOVOL3
Miscellaneous
canSAR (ICR)OVOL3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOVOL3
EVEXOVOL3
GoPubMedOVOL3
iHOPOVOL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:18 CEST 2017

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