Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OXCT2 (3-oxoacid CoA-transferase 2)

Identity

Alias_symbol (synonym)FKSG25
FLJ00030
SCOT-T
Other aliasSCOTT
HGNC (Hugo) OXCT2
LocusID (NCBI) 64064
Atlas_Id 71597
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 39769525 and ends at 39771348 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OXCT2   18606
Cards
Entrez_Gene (NCBI)OXCT2  64064  3-oxoacid CoA-transferase 2
AliasesFKSG25; SCOTT
GeneCards (Weizmann)OXCT2
Ensembl hg19 (Hinxton)ENSG00000198754 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198754 [Gene_View]  chr1:39769525-39771348 [Contig_View]  OXCT2 [Vega]
ICGC DataPortalENSG00000198754
TCGA cBioPortalOXCT2
AceView (NCBI)OXCT2
Genatlas (Paris)OXCT2
WikiGenes64064
SOURCE (Princeton)OXCT2
Genetics Home Reference (NIH)OXCT2
Genomic and cartography
GoldenPath hg38 (UCSC)OXCT2  -     chr1:39769525-39771348 -  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OXCT2  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblOXCT2 - 1p34.2 [CytoView hg19]  OXCT2 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIOXCT2 [Mapview hg19]  OXCT2 [Mapview hg38]
OMIM610289   
Gene and transcription
Genbank (Entrez)AB050193 AK024440 AK093089 AK314586 AY013700
RefSeq transcript (Entrez)NM_022120
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OXCT2
Cluster EST : UnigeneHs.472491 [ NCBI ]
CGAP (NCI)Hs.472491
Alternative Splicing GalleryENSG00000198754
Gene ExpressionOXCT2 [ NCBI-GEO ]   OXCT2 [ EBI - ARRAY_EXPRESS ]   OXCT2 [ SEEK ]   OXCT2 [ MEM ]
Gene Expression Viewer (FireBrowse)OXCT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64064
GTEX Portal (Tissue expression)OXCT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYC2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYC2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYC2
Splice isoforms : SwissVarQ9BYC2
Catalytic activity : Enzyme2.8.3.5 [ Enzyme-Expasy ]   2.8.3.52.8.3.5 [ IntEnz-EBI ]   2.8.3.5 [ BRENDA ]   2.8.3.5 [ KEGG ]   
PhosPhoSitePlusQ9BYC2
Domaine pattern : Prosite (Expaxy)COA_TRANSF_1 (PS01273)    COA_TRANSF_2 (PS01274)   
Domains : Interpro (EBI)3-oxoacid_CoA-transf_A    3-oxoacid_CoA-transf_B    3-oxoacid_CoA-transferase    CoA_trans_fam_I    CoA_transf_AS    CoA_transf_BS   
Domain families : Pfam (Sanger)CoA_trans (PF01144)   
Domain families : Pfam (NCBI)pfam01144   
Domain families : Smart (EMBL)CoA_trans (SM00882)  
Conserved Domain (NCBI)OXCT2
DMDM Disease mutations64064
Blocks (Seattle)OXCT2
SuperfamilyQ9BYC2
Human Protein AtlasENSG00000198754
Peptide AtlasQ9BYC2
HPRD15093
IPIIPI00307395   IPI01012056   IPI00450348   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYC2
IntAct (EBI)Q9BYC2
FunCoupENSG00000198754
BioGRIDOXCT2
STRING (EMBL)OXCT2
ZODIACOXCT2
Ontologies - Pathways
QuickGOQ9BYC2
Ontology : AmiGOmitochondrion  3-oxoacid CoA-transferase activity  motile cilium  ketone body catabolic process  
Ontology : EGO-EBImitochondrion  3-oxoacid CoA-transferase activity  motile cilium  ketone body catabolic process  
Pathways : KEGGSynthesis and degradation of ketone bodies    Valine, leucine and isoleucine degradation    Butanoate metabolism   
NDEx NetworkOXCT2
Atlas of Cancer Signalling NetworkOXCT2
Wikipedia pathwaysOXCT2
Orthology - Evolution
OrthoDB64064
GeneTree (enSembl)ENSG00000198754
Phylogenetic Trees/Animal Genes : TreeFamOXCT2
HOVERGENQ9BYC2
HOGENOMQ9BYC2
Homologs : HomoloGeneOXCT2
Homology/Alignments : Family Browser (UCSC)OXCT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOXCT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OXCT2
dbVarOXCT2
ClinVarOXCT2
1000_GenomesOXCT2 
Exome Variant ServerOXCT2
ExAC (Exome Aggregation Consortium)OXCT2 (select the gene name)
Genetic variants : HAPMAP64064
Genomic Variants (DGV)OXCT2 [DGVbeta]
DECIPHEROXCT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOXCT2 
Mutations
ICGC Data PortalOXCT2 
TCGA Data PortalOXCT2 
Broad Tumor PortalOXCT2
OASIS PortalOXCT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOXCT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOXCT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OXCT2
DgiDB (Drug Gene Interaction Database)OXCT2
DoCM (Curated mutations)OXCT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OXCT2 (select a term)
intoGenOXCT2
Cancer3DOXCT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610289   
Orphanet
MedgenOXCT2
Genetic Testing Registry OXCT2
NextProtQ9BYC2 [Medical]
TSGene64064
GENETestsOXCT2
Target ValidationOXCT2
Huge Navigator OXCT2 [HugePedia]
snp3D : Map Gene to Disease64064
BioCentury BCIQOXCT2
ClinGenOXCT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64064
Chemical/Pharm GKB GenePA38360
Clinical trialOXCT2
Miscellaneous
canSAR (ICR)OXCT2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOXCT2
EVEXOXCT2
GoPubMedOXCT2
iHOPOXCT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed May 31 15:35:18 CEST 2017

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