Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OXCT2P1 (3-oxoacid CoA-transferase 2 pseudogene 1)

Identity

Alias_namesOXCT2P
3-oxoacid CoA transferase 2 pseudogene
Other alias
HGNC (Hugo) OXCT2P1
LocusID (NCBI) 192217
Atlas_Id 77942
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 39514866 and ends at 39516669 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OXCT2P1   21627
Cards
Entrez_Gene (NCBI)OXCT2P1  192217  3-oxoacid CoA-transferase 2 pseudogene 1
AliasesOXCT2P
GeneCards (Weizmann)OXCT2P1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:39514866-39516669 [Contig_View]  OXCT2P1 [Vega]
TCGA cBioPortalOXCT2P1
AceView (NCBI)OXCT2P1
Genatlas (Paris)OXCT2P1
WikiGenes192217
SOURCE (Princeton)OXCT2P1
Genetics Home Reference (NIH)OXCT2P1
Genomic and cartography
GoldenPath hg38 (UCSC)OXCT2P1  -     chr1:39514866-39516669 +  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OXCT2P1  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblOXCT2P1 - 1p34.3 [CytoView hg19]  OXCT2P1 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIOXCT2P1 [Mapview hg19]  OXCT2P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC072388
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OXCT2P1
Cluster EST : UnigeneHs.472491 [ NCBI ]
CGAP (NCI)Hs.472491
Gene ExpressionOXCT2P1 [ NCBI-GEO ]   OXCT2P1 [ EBI - ARRAY_EXPRESS ]   OXCT2P1 [ SEEK ]   OXCT2P1 [ MEM ]
Gene Expression Viewer (FireBrowse)OXCT2P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)192217
GTEX Portal (Tissue expression)OXCT2P1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OXCT2P1
DMDM Disease mutations192217
Blocks (Seattle)OXCT2P1
Protein Interaction databases
BioGRIDOXCT2P1
STRING (EMBL)OXCT2P1
ZODIACOXCT2P1
Ontologies - Pathways
Huge Navigator OXCT2P1 [HugePedia]
snp3D : Map Gene to Disease192217
BioCentury BCIQOXCT2P1
ClinGenOXCT2P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD192217
Chemical/Pharm GKB GenePA134863259
Clinical trialOXCT2P1
Miscellaneous
canSAR (ICR)OXCT2P1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOXCT2P1
EVEXOXCT2P1
GoPubMedOXCT2P1
iHOPOXCT2P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:02:16 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.