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OXER1 (oxoeicosanoid (OXE) receptor 1)

Identity

Alias_symbol (synonym)GPCR
TG1019
GPR170
Other alias
HGNC (Hugo) OXER1
LocusID (NCBI) 165140
Atlas_Id 46527
Location 2p21  [Link to chromosome band 2p21]
Location_base_pair Starts at 42989639 and ends at 42991401 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OXER1   24884
Cards
Entrez_Gene (NCBI)OXER1  165140  oxoeicosanoid (OXE) receptor 1
AliasesGPCR; GPR170; TG1019
GeneCards (Weizmann)OXER1
Ensembl hg19 (Hinxton)ENSG00000162881 [Gene_View]  chr2:42989639-42991401 [Contig_View]  OXER1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000162881 [Gene_View]  chr2:42989639-42991401 [Contig_View]  OXER1 [Vega]
ICGC DataPortalENSG00000162881
TCGA cBioPortalOXER1
AceView (NCBI)OXER1
Genatlas (Paris)OXER1
WikiGenes165140
SOURCE (Princeton)OXER1
Genetics Home Reference (NIH)OXER1
Genomic and cartography
GoldenPath hg19 (UCSC)OXER1  -     chr2:42989639-42991401 -  2p21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OXER1  -     2p21   [Description]    (hg38-Dec_2013)
EnsemblOXER1 - 2p21 [CytoView hg19]  OXER1 - 2p21 [CytoView hg38]
Mapping of homologs : NCBIOXER1 [Mapview hg19]  OXER1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB083055 AY158687 BC063549
RefSeq transcript (Entrez)NM_148962
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)OXER1
Cluster EST : UnigeneHs.168439 [ NCBI ]
CGAP (NCI)Hs.168439
Alternative Splicing GalleryENSG00000162881
Gene ExpressionOXER1 [ NCBI-GEO ]   OXER1 [ EBI - ARRAY_EXPRESS ]   OXER1 [ SEEK ]   OXER1 [ MEM ]
Gene Expression Viewer (FireBrowse)OXER1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)165140
GTEX Portal (Tissue expression)OXER1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDS5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDS5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDS5
Splice isoforms : SwissVarQ8TDS5
PhosPhoSitePlusQ8TDS5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)OXER1
DMDM Disease mutations165140
Blocks (Seattle)OXER1
SuperfamilyQ8TDS5
Human Protein AtlasENSG00000162881
Peptide AtlasQ8TDS5
HPRD17812
IPIIPI00152594   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDS5
IntAct (EBI)Q8TDS5
FunCoupENSG00000162881
BioGRIDOXER1
STRING (EMBL)OXER1
ZODIACOXER1
Ontologies - Pathways
QuickGOQ8TDS5
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  regulation of cAMP biosynthetic process  5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid binding  5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding  5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  regulation of cAMP biosynthetic process  5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid binding  5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding  5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding  
NDEx NetworkOXER1
Atlas of Cancer Signalling NetworkOXER1
Wikipedia pathwaysOXER1
Orthology - Evolution
OrthoDB165140
GeneTree (enSembl)ENSG00000162881
Phylogenetic Trees/Animal Genes : TreeFamOXER1
HOVERGENQ8TDS5
HOGENOMQ8TDS5
Homologs : HomoloGeneOXER1
Homology/Alignments : Family Browser (UCSC)OXER1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOXER1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OXER1
dbVarOXER1
ClinVarOXER1
1000_GenomesOXER1 
Exome Variant ServerOXER1
ExAC (Exome Aggregation Consortium)OXER1 (select the gene name)
Genetic variants : HAPMAP165140
Genomic Variants (DGV)OXER1 [DGVbeta]
DECIPHER (Syndromes)2:42989639-42991401  ENSG00000162881
CONAN: Copy Number AnalysisOXER1 
Mutations
ICGC Data PortalOXER1 
TCGA Data PortalOXER1 
Broad Tumor PortalOXER1
OASIS PortalOXER1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOXER1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOXER1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OXER1
DgiDB (Drug Gene Interaction Database)OXER1
DoCM (Curated mutations)OXER1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OXER1 (select a term)
intoGenOXER1
Cancer3DOXER1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOXER1
Genetic Testing Registry OXER1
NextProtQ8TDS5 [Medical]
TSGene165140
GENETestsOXER1
Huge Navigator OXER1 [HugePedia]
snp3D : Map Gene to Disease165140
BioCentury BCIQOXER1
ClinGenOXER1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD165140
Chemical/Pharm GKB GenePA134983779
Clinical trialOXER1
Miscellaneous
canSAR (ICR)OXER1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOXER1
EVEXOXER1
GoPubMedOXER1
iHOPOXER1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:13:17 CEST 2017

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