Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OXGR1 (oxoglutarate receptor 1)

Identity

Other namesGPR80
GPR99
P2RY15
P2Y15
aKGR
HGNC (Hugo) OXGR1
LocusID (NCBI) 27199
Atlas_Id 51279
Location 13q32.1
Location_base_pair Starts at 97637973 and ends at 97646604 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OXGR1   4531
Cards
Entrez_Gene (NCBI)OXGR1  27199  oxoglutarate receptor 1
GeneCards (Weizmann)OXGR1
Ensembl hg19 (Hinxton)ENSG00000165621 [Gene_View]  chr13:97637973-97646604 [Contig_View]  OXGR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165621 [Gene_View]  chr13:97637973-97646604 [Contig_View]  OXGR1 [Vega]
ICGC DataPortalENSG00000165621
TCGA cBioPortalOXGR1
AceView (NCBI)OXGR1
Genatlas (Paris)OXGR1
WikiGenes27199
SOURCE (Princeton)OXGR1
Genomic and cartography
GoldenPath hg19 (UCSC)OXGR1  -     chr13:97637973-97646604 -  13q32.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OXGR1  -     13q32.1   [Description]    (hg38-Dec_2013)
EnsemblOXGR1 - 13q32.1 [CytoView hg19]  OXGR1 - 13q32.1 [CytoView hg38]
Mapping of homologs : NCBIOXGR1 [Mapview hg19]  OXGR1 [Mapview hg38]
OMIM606922   
Gene and transcription
Genbank (Entrez)AF370886 AJ305372 AK122639 AK313684 BC103881
RefSeq transcript (Entrez)NM_080818
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_009952 NW_004929389
Consensus coding sequences : CCDS (NCBI)OXGR1
Cluster EST : UnigeneHs.352218 [ NCBI ]
CGAP (NCI)Hs.352218
Alternative Splicing : Fast-db (Paris)GSHG0008588
Alternative Splicing GalleryENSG00000165621
Gene ExpressionOXGR1 [ NCBI-GEO ]   OXGR1 [ EBI - ARRAY_EXPRESS ]   OXGR1 [ SEEK ]   OXGR1 [ MEM ]
Gene Expression Viewer (FireBrowse)OXGR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)27199
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96P68 (Uniprot)
NextProtQ96P68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96P68
Splice isoforms : SwissVarQ96P68 (Swissvar)
PhosPhoSitePlusQ96P68
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations27199
Blocks (Seattle)OXGR1
SuperfamilyQ96P68
Human Protein AtlasENSG00000165621
Peptide AtlasQ96P68
HPRD06082
IPIIPI00044282   IPI01010995   IPI01010308   
Protein Interaction databases
DIP (DOE-UCLA)Q96P68
IntAct (EBI)Q96P68
FunCoupENSG00000165621
BioGRIDOXGR1
STRING (EMBL)OXGR1
ZODIACOXGR1
Ontologies - Pathways
QuickGOQ96P68
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
NDEx Network
Atlas of Cancer Signalling NetworkOXGR1
Wikipedia pathwaysOXGR1
Orthology - Evolution
OrthoDB27199
GeneTree (enSembl)ENSG00000165621
Phylogenetic Trees/Animal Genes : TreeFamOXGR1
Homologs : HomoloGeneOXGR1
Homology/Alignments : Family Browser (UCSC)OXGR1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerOXGR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OXGR1
dbVarOXGR1
ClinVarOXGR1
1000_GenomesOXGR1 
Exome Variant ServerOXGR1
ExAC (Exome Aggregation Consortium)OXGR1 (select the gene name)
SNP (GeneSNP Utah)OXGR1
SNP : HGBaseOXGR1
Genetic variants : HAPMAPOXGR1
Genomic Variants (DGV)OXGR1 [DGVbeta]
Mutations
ICGC Data PortalOXGR1 
TCGA Data PortalOXGR1 
Broad Tumor PortalOXGR1
OASIS PortalOXGR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOXGR1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OXGR1
DgiDB (Drug Gene Interaction Database)OXGR1
DoCM (Curated mutations)OXGR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OXGR1 (select a term)
intoGenOXGR1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)13:97637973-97646604
CONAN: Copy Number AnalysisOXGR1 
Mutations and Diseases : HGMDOXGR1
OMIM606922   
MedgenOXGR1
Genetic Testing Registry OXGR1
NextProtQ96P68 [Medical]
TSGene27199
GENETestsOXGR1
Huge Navigator OXGR1 [HugePedia]  OXGR1 [HugeCancerGEM]
snp3D : Map Gene to Disease27199
BioCentury BCIQOXGR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27199
Chemical/Pharm GKB GenePA28924
Clinical trialOXGR1
Miscellaneous
canSAR (ICR)OXGR1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOXGR1
GoPubMedOXGR1
iHOPOXGR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 17:57:33 CEST 2016

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