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OXLD1 (oxidoreductase-like domain containing 1)

Identity

Alias_namesC17orf90
chromosome 17 open reading frame 90
oxidoreductase-like domain containing 1
Alias_symbol (synonym)MGC104712
Other alias
HGNC (Hugo) OXLD1
LocusID (NCBI) 339229
Atlas_Id 71598
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 79632066 and ends at 79633667 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OXLD1   27901
Cards
Entrez_Gene (NCBI)OXLD1  339229  oxidoreductase-like domain containing 1
AliasesC17orf90
GeneCards (Weizmann)OXLD1
Ensembl hg19 (Hinxton)ENSG00000204237 [Gene_View]  chr17:79632066-79633667 [Contig_View]  OXLD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204237 [Gene_View]  chr17:79632066-79633667 [Contig_View]  OXLD1 [Vega]
ICGC DataPortalENSG00000204237
TCGA cBioPortalOXLD1
AceView (NCBI)OXLD1
Genatlas (Paris)OXLD1
WikiGenes339229
SOURCE (Princeton)OXLD1
Genetics Home Reference (NIH)OXLD1
Genomic and cartography
GoldenPath hg19 (UCSC)OXLD1  -     chr17:79632066-79633667 -  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OXLD1  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblOXLD1 - 17q25.3 [CytoView hg19]  OXLD1 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIOXLD1 [Mapview hg19]  OXLD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY007126 BC038412 BC048102 BC090923 BE386163
RefSeq transcript (Entrez)NM_001039842 NM_001304994 NM_001304995 NM_001304999
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)OXLD1
Cluster EST : UnigeneHs.744125 [ NCBI ]
CGAP (NCI)Hs.744125
Alternative Splicing GalleryENSG00000204237
Gene ExpressionOXLD1 [ NCBI-GEO ]   OXLD1 [ EBI - ARRAY_EXPRESS ]   OXLD1 [ SEEK ]   OXLD1 [ MEM ]
Gene Expression Viewer (FireBrowse)OXLD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339229
GTEX Portal (Tissue expression)OXLD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BKU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BKU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BKU9
Splice isoforms : SwissVarQ5BKU9
PhosPhoSitePlusQ5BKU9
Domains : Interpro (EBI)Oxidoreductase-like_N   
Domain families : Pfam (Sanger)Oxidored-like (PF09791)   
Domain families : Pfam (NCBI)pfam09791   
Conserved Domain (NCBI)OXLD1
DMDM Disease mutations339229
Blocks (Seattle)OXLD1
SuperfamilyQ5BKU9
Human Protein AtlasENSG00000204237
Peptide AtlasQ5BKU9
IPIIPI00555988   
Protein Interaction databases
DIP (DOE-UCLA)Q5BKU9
IntAct (EBI)Q5BKU9
FunCoupENSG00000204237
BioGRIDOXLD1
STRING (EMBL)OXLD1
ZODIACOXLD1
Ontologies - Pathways
QuickGOQ5BKU9
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkOXLD1
Atlas of Cancer Signalling NetworkOXLD1
Wikipedia pathwaysOXLD1
Orthology - Evolution
OrthoDB339229
GeneTree (enSembl)ENSG00000204237
Phylogenetic Trees/Animal Genes : TreeFamOXLD1
HOVERGENQ5BKU9
HOGENOMQ5BKU9
Homologs : HomoloGeneOXLD1
Homology/Alignments : Family Browser (UCSC)OXLD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOXLD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OXLD1
dbVarOXLD1
ClinVarOXLD1
1000_GenomesOXLD1 
Exome Variant ServerOXLD1
ExAC (Exome Aggregation Consortium)OXLD1 (select the gene name)
Genetic variants : HAPMAP339229
Genomic Variants (DGV)OXLD1 [DGVbeta]
DECIPHER (Syndromes)17:79632066-79633667  ENSG00000204237
CONAN: Copy Number AnalysisOXLD1 
Mutations
ICGC Data PortalOXLD1 
TCGA Data PortalOXLD1 
Broad Tumor PortalOXLD1
OASIS PortalOXLD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOXLD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OXLD1
DgiDB (Drug Gene Interaction Database)OXLD1
DoCM (Curated mutations)OXLD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OXLD1 (select a term)
intoGenOXLD1
Cancer3DOXLD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOXLD1
Genetic Testing Registry OXLD1
NextProtQ5BKU9 [Medical]
TSGene339229
GENETestsOXLD1
Huge Navigator OXLD1 [HugePedia]
snp3D : Map Gene to Disease339229
BioCentury BCIQOXLD1
ClinGenOXLD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339229
Chemical/Pharm GKB GenePA162378543
Clinical trialOXLD1
Miscellaneous
canSAR (ICR)OXLD1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOXLD1
EVEXOXLD1
GoPubMedOXLD1
iHOPOXLD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:37:34 CET 2017

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