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OXNAD1 (oxidoreductase NAD binding domain containing 1)

Identity

Alias_namesoxidoreductase NAD-binding domain containing 1
Alias_symbol (synonym)MGC15763
Other alias-
HGNC (Hugo) OXNAD1
LocusID (NCBI) 92106
Atlas_Id 71599
Location 3p25.1  [Link to chromosome band 3p25]
Location_base_pair Starts at 16265160 and ends at 16306087 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DENND2C (1p13.2) / OXNAD1 (3p25.1)MLF2 (12p13.31) / OXNAD1 (3p25.1)NOB1 (16q22.1) / OXNAD1 (3p25.1)
OXNAD1 (3p25.1) / LRRTM4 (2p12)OXNAD1 (3p25.1) / OXNAD1 (3p25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OXNAD1   25128
Cards
Entrez_Gene (NCBI)OXNAD1  92106  oxidoreductase NAD binding domain containing 1
Aliases
GeneCards (Weizmann)OXNAD1
Ensembl hg19 (Hinxton)ENSG00000154814 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154814 [Gene_View]  chr3:16265160-16306087 [Contig_View]  OXNAD1 [Vega]
ICGC DataPortalENSG00000154814
TCGA cBioPortalOXNAD1
AceView (NCBI)OXNAD1
Genatlas (Paris)OXNAD1
WikiGenes92106
SOURCE (Princeton)OXNAD1
Genetics Home Reference (NIH)OXNAD1
Genomic and cartography
GoldenPath hg38 (UCSC)OXNAD1  -     chr3:16265160-16306087 +  3p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OXNAD1  -     3p25.1   [Description]    (hg19-Feb_2009)
EnsemblOXNAD1 - 3p25.1 [CytoView hg19]  OXNAD1 - 3p25.1 [CytoView hg38]
Mapping of homologs : NCBIOXNAD1 [Mapview hg19]  OXNAD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209556 AK298829 AK307258 AL583453 AL832787
RefSeq transcript (Entrez)NM_001330670 NM_001330671 NM_138381
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OXNAD1
Cluster EST : UnigeneHs.655449 [ NCBI ]
CGAP (NCI)Hs.655449
Alternative Splicing GalleryENSG00000154814
Gene ExpressionOXNAD1 [ NCBI-GEO ]   OXNAD1 [ EBI - ARRAY_EXPRESS ]   OXNAD1 [ SEEK ]   OXNAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)OXNAD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92106
GTEX Portal (Tissue expression)OXNAD1
Human Protein AtlasENSG00000154814-OXNAD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96HP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96HP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96HP4
Splice isoforms : SwissVarQ96HP4
Catalytic activity : Enzyme1.-.-.- [ Enzyme-Expasy ]   1.-.-.-1.-.-.- [ IntEnz-EBI ]   1.-.-.- [ BRENDA ]   1.-.-.- [ KEGG ]   
PhosPhoSitePlusQ96HP4
Domaine pattern : Prosite (Expaxy)FAD_FR (PS51384)   
Domains : Interpro (EBI)Fd_Rdtase_FAD-bd    OxRdtase_FAD/NAD-bd    Phe_hydroxylase    Riboflavin_synthase-like_b-brl   
Domain families : Pfam (Sanger)NAD_binding_1 (PF00175)   
Domain families : Pfam (NCBI)pfam00175   
Conserved Domain (NCBI)OXNAD1
DMDM Disease mutations92106
Blocks (Seattle)OXNAD1
SuperfamilyQ96HP4
Human Protein Atlas [tissue]ENSG00000154814-OXNAD1 [tissue]
Peptide AtlasQ96HP4
HPRD14446
IPIIPI01015247   IPI00063160   IPI00925385   IPI00791590   IPI00925628   
Protein Interaction databases
DIP (DOE-UCLA)Q96HP4
IntAct (EBI)Q96HP4
FunCoupENSG00000154814
BioGRIDOXNAD1
STRING (EMBL)OXNAD1
ZODIACOXNAD1
Ontologies - Pathways
QuickGOQ96HP4
Ontology : AmiGOmolecular_function  cellular_component  mitochondrion  biological_process  oxidoreductase activity  oxidation-reduction process  
Ontology : EGO-EBImolecular_function  cellular_component  mitochondrion  biological_process  oxidoreductase activity  oxidation-reduction process  
NDEx NetworkOXNAD1
Atlas of Cancer Signalling NetworkOXNAD1
Wikipedia pathwaysOXNAD1
Orthology - Evolution
OrthoDB92106
GeneTree (enSembl)ENSG00000154814
Phylogenetic Trees/Animal Genes : TreeFamOXNAD1
HOVERGENQ96HP4
HOGENOMQ96HP4
Homologs : HomoloGeneOXNAD1
Homology/Alignments : Family Browser (UCSC)OXNAD1
Gene fusions - Rearrangements
Tumor Fusion PortalOXNAD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOXNAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OXNAD1
dbVarOXNAD1
ClinVarOXNAD1
1000_GenomesOXNAD1 
Exome Variant ServerOXNAD1
ExAC (Exome Aggregation Consortium)ENSG00000154814
GNOMAD BrowserENSG00000154814
Genetic variants : HAPMAP92106
Genomic Variants (DGV)OXNAD1 [DGVbeta]
DECIPHEROXNAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOXNAD1 
Mutations
ICGC Data PortalOXNAD1 
TCGA Data PortalOXNAD1 
Broad Tumor PortalOXNAD1
OASIS PortalOXNAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOXNAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOXNAD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch OXNAD1
DgiDB (Drug Gene Interaction Database)OXNAD1
DoCM (Curated mutations)OXNAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OXNAD1 (select a term)
intoGenOXNAD1
Cancer3DOXNAD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOXNAD1
MedgenOXNAD1
Genetic Testing Registry OXNAD1
NextProtQ96HP4 [Medical]
TSGene92106
GENETestsOXNAD1
Target ValidationOXNAD1
Huge Navigator OXNAD1 [HugePedia]
snp3D : Map Gene to Disease92106
BioCentury BCIQOXNAD1
ClinGenOXNAD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92106
Chemical/Pharm GKB GenePA142671213
Clinical trialOXNAD1
Miscellaneous
canSAR (ICR)OXNAD1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOXNAD1
EVEXOXNAD1
GoPubMedOXNAD1
iHOPOXNAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:08:42 CET 2017

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