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OXR1 (oxidation resistance 1)

Identity

Alias (NCBI)CHEGDD
Nbla00307
TLDC3
HGNC (Hugo) OXR1
HGNC Alias symbTLDC3
HGNC Alias nameTBC/LysM-associated domain containing 3
LocusID (NCBI) 55074
Atlas_Id 54522
Location 8q23.1  [Link to chromosome band 8q23]
Location_base_pair Starts at 106657808 and ends at 106752693 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP6V0E1 (5q35.1) / OXR1 (8q23.1)C3 (19p13.3) / OXR1 (8q23.1)IREB2 (15q25.1) / OXR1 (8q23.1)
KDM5B (1q32.1) / OXR1 (8q23.1)MALAT1 (11q13.1) / OXR1 (8q23.1)OXR1 (8q23.1) / CAV1 (7q31.2)
OXR1 (8q23.1) / COX6C (8q22.2)OXR1 (8q23.1) / CSMD3 (8q23.3)OXR1 (8q23.1) / LRCH4 (7q22.1)
OXR1 (8q23.1) / MET (7q31.2)OXR1 (8q23.1) / OXR1 (8q23.1)OXR1 (8q23.1) / RSPO2 (8q23.1)
PTPRK (6q22.33) / OXR1 (8q23.1)RSPO2 (8q23.1) / OXR1 (8q23.1)STK3 (8q22.2) / OXR1 (8q23.1)
YWHAZ (8q22.3) / OXR1 (8q23.1)ZNF559 (19p13.2) / OXR1 (8q23.1)OXR1 8q23.1 / CSMD3 8q23.3
PTPRK 6q22.33 / OXR1 8q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)OXR1   15822
Cards
Entrez_Gene (NCBI)OXR1    oxidation resistance 1
AliasesCHEGDD; Nbla00307; TLDC3
GeneCards (Weizmann)OXR1
Ensembl hg19 (Hinxton)ENSG00000164830 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164830 [Gene_View]  ENSG00000164830 [Sequence]  chr8:106657808-106752693 [Contig_View]  OXR1 [Vega]
ICGC DataPortalENSG00000164830
TCGA cBioPortalOXR1
AceView (NCBI)OXR1
Genatlas (Paris)OXR1
SOURCE (Princeton)OXR1
Genetics Home Reference (NIH)OXR1
Genomic and cartography
GoldenPath hg38 (UCSC)OXR1  -     chr8:106657808-106752693 +  8q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OXR1  -     8q23.1   [Description]    (hg19-Feb_2009)
GoldenPathOXR1 - 8q23.1 [CytoView hg19]  OXR1 - 8q23.1 [CytoView hg38]
ImmunoBaseENSG00000164830
Genome Data Viewer NCBIOXR1 [Mapview hg19]  
OMIM213000   605609   
Gene and transcription
Genbank (Entrez)AB075503 AF309387 AK000987 AK096148 AK098168
RefSeq transcript (Entrez)NM_001198532 NM_001198533 NM_001198534 NM_001198535 NM_018002 NM_181354
Consensus coding sequences : CCDS (NCBI)OXR1
Gene ExpressionOXR1 [ NCBI-GEO ]   OXR1 [ EBI - ARRAY_EXPRESS ]   OXR1 [ SEEK ]   OXR1 [ MEM ]
Gene Expression Viewer (FireBrowse)OXR1 [ Firebrowse - Broad ]
GenevisibleExpression of OXR1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55074
GTEX Portal (Tissue expression)OXR1
Human Protein AtlasENSG00000164830-OXR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OXR1
Human Protein Atlas [tissue]ENSG00000164830-OXR1 [tissue]
HPRD16126
Protein Interaction databases
BioGRIDOXR1
STRING (EMBL)OXR1
ZODIACOXR1
Ontologies - Pathways
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOXR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:24:02 CEST 2021

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