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PABPC1L2A (poly(A) binding protein cytoplasmic 1 like 2A)

Identity

Alias (NCBI)RBM32A
HGNC (Hugo) PABPC1L2A
HGNC Previous nameRBM32A
HGNC Previous nameRNA binding motif protein 32A
 poly(A) binding protein, cytoplasmic 1-like 2A
LocusID (NCBI) 340529
Atlas_Id 71613
Location Xq13.2  [Link to chromosome band Xq13]
Location_base_pair Starts at 73077276 and ends at 73079512 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PABPC1L2A   27989
Cards
Entrez_Gene (NCBI)PABPC1L2A    poly(A) binding protein cytoplasmic 1 like 2A
AliasesRBM32A
GeneCards (Weizmann)PABPC1L2A
Ensembl hg19 (Hinxton)ENSG00000186288 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186288 [Gene_View]  ENSG00000186288 [Sequence]  chrX:73077276-73079512 [Contig_View]  PABPC1L2A [Vega]
ICGC DataPortalENSG00000186288
TCGA cBioPortalPABPC1L2A
AceView (NCBI)PABPC1L2A
Genatlas (Paris)PABPC1L2A
SOURCE (Princeton)PABPC1L2A
Genetics Home Reference (NIH)PABPC1L2A
Genomic and cartography
GoldenPath hg38 (UCSC)PABPC1L2A  -     chrX:73077276-73079512 -  Xq13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PABPC1L2A  -     Xq13.2   [Description]    (hg19-Feb_2009)
GoldenPathPABPC1L2A - Xq13.2 [CytoView hg19]  PABPC1L2A - Xq13.2 [CytoView hg38]
ImmunoBaseENSG00000186288
Genome Data Viewer NCBIPABPC1L2A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AY730282
RefSeq transcript (Entrez)NM_001012977
Consensus coding sequences : CCDS (NCBI)PABPC1L2A
Gene ExpressionPABPC1L2A [ NCBI-GEO ]   PABPC1L2A [ EBI - ARRAY_EXPRESS ]   PABPC1L2A [ SEEK ]   PABPC1L2A [ MEM ]
Gene Expression Viewer (FireBrowse)PABPC1L2A [ Firebrowse - Broad ]
GenevisibleExpression of PABPC1L2A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340529
GTEX Portal (Tissue expression)PABPC1L2A
Human Protein AtlasENSG00000186288-PABPC1L2A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQF8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JQF8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQF8
PhosPhoSitePlusQ5JQF8
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)PABPC1L2A
SuperfamilyQ5JQF8
AlphaFold pdb e-kbQ5JQF8   
Human Protein Atlas [tissue]ENSG00000186288-PABPC1L2A [tissue]
HPRD15178
Protein Interaction databases
DIP (DOE-UCLA)Q5JQF8
IntAct (EBI)Q5JQF8
BioGRIDPABPC1L2A
STRING (EMBL)PABPC1L2A
ZODIACPABPC1L2A
Ontologies - Pathways
QuickGOQ5JQF8
Ontology : AmiGORNA binding  extracellular exosome  
Ontology : EGO-EBIRNA binding  extracellular exosome  
NDEx NetworkPABPC1L2A
Atlas of Cancer Signalling NetworkPABPC1L2A
Wikipedia pathwaysPABPC1L2A
Orthology - Evolution
OrthoDB340529
GeneTree (enSembl)ENSG00000186288
Phylogenetic Trees/Animal Genes : TreeFamPABPC1L2A
Homologs : HomoloGenePABPC1L2A
Homology/Alignments : Family Browser (UCSC)PABPC1L2A
Gene fusions - Rearrangements
Fusion : QuiverPABPC1L2A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPABPC1L2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PABPC1L2A
dbVarPABPC1L2A
ClinVarPABPC1L2A
MonarchPABPC1L2A
1000_GenomesPABPC1L2A 
Exome Variant ServerPABPC1L2A
GNOMAD BrowserENSG00000186288
Varsome BrowserPABPC1L2A
ACMGPABPC1L2A variants
VarityQ5JQF8
Genomic Variants (DGV)PABPC1L2A [DGVbeta]
DECIPHERPABPC1L2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPABPC1L2A 
Mutations
ICGC Data PortalPABPC1L2A 
TCGA Data PortalPABPC1L2A 
Broad Tumor PortalPABPC1L2A
OASIS PortalPABPC1L2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPABPC1L2A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPABPC1L2A
Mutations and Diseases : HGMDPABPC1L2A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPABPC1L2A
DgiDB (Drug Gene Interaction Database)PABPC1L2A
DoCM (Curated mutations)PABPC1L2A
CIViC (Clinical Interpretations of Variants in Cancer)PABPC1L2A
Cancer3DPABPC1L2A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPABPC1L2A
MedgenPABPC1L2A
Genetic Testing Registry PABPC1L2A
NextProtQ5JQF8 [Medical]
GENETestsPABPC1L2A
Target ValidationPABPC1L2A
Huge Navigator PABPC1L2A [HugePedia]
ClinGenPABPC1L2A
Clinical trials, drugs, therapy
MyCancerGenomePABPC1L2A
Protein Interactions : CTDPABPC1L2A
Pharm GKB GenePA162398587
PharosQ5JQF8
Clinical trialPABPC1L2A
Miscellaneous
canSAR (ICR)PABPC1L2A
HarmonizomePABPC1L2A
DataMed IndexPABPC1L2A
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPABPC1L2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:15:18 CEST 2021

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