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PABPC1L2A (poly(A) binding protein cytoplasmic 1 like 2A)

Identity

Alias_namesRBM32A
RNA binding motif protein 32A
poly(A) binding protein, cytoplasmic 1-like 2A
Other alias
HGNC (Hugo) PABPC1L2A
LocusID (NCBI) 340529
Atlas_Id 71613
Location Xq13.2  [Link to chromosome band Xq13]
Location_base_pair Starts at 73077338 and ends at 73079512 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PABPC1L2A   27989
Cards
Entrez_Gene (NCBI)PABPC1L2A  340529  poly(A) binding protein cytoplasmic 1 like 2A
AliasesRBM32A
GeneCards (Weizmann)PABPC1L2A
Ensembl hg19 (Hinxton)ENSG00000186288 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186288 [Gene_View]  chrX:73077338-73079512 [Contig_View]  PABPC1L2A [Vega]
ICGC DataPortalENSG00000186288
TCGA cBioPortalPABPC1L2A
AceView (NCBI)PABPC1L2A
Genatlas (Paris)PABPC1L2A
WikiGenes340529
SOURCE (Princeton)PABPC1L2A
Genetics Home Reference (NIH)PABPC1L2A
Genomic and cartography
GoldenPath hg38 (UCSC)PABPC1L2A  -     chrX:73077338-73079512 -  Xq13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PABPC1L2A  -     Xq13.2   [Description]    (hg19-Feb_2009)
EnsemblPABPC1L2A - Xq13.2 [CytoView hg19]  PABPC1L2A - Xq13.2 [CytoView hg38]
Mapping of homologs : NCBIPABPC1L2A [Mapview hg19]  PABPC1L2A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY730282
RefSeq transcript (Entrez)NM_001012977
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PABPC1L2A
Cluster EST : UnigeneHs.450320 [ NCBI ]
CGAP (NCI)Hs.450320
Alternative Splicing GalleryENSG00000186288
Gene ExpressionPABPC1L2A [ NCBI-GEO ]   PABPC1L2A [ EBI - ARRAY_EXPRESS ]   PABPC1L2A [ SEEK ]   PABPC1L2A [ MEM ]
Gene Expression Viewer (FireBrowse)PABPC1L2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340529
GTEX Portal (Tissue expression)PABPC1L2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQF8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [exprmssioj]/a>  [interaction]
NextProtQ5JQF8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQF8
Splice isoforms : SwissVarQ5JQF8
PhosPhoSitePlusQ5JQF8
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)PABPC1L2A
DMDM Disease mutations340529
Blocks (Seattle)PABPC1L2A
SuperfamilyQ5JQF8
Human Protein AtlasENSG00000186288
Peptide AtlasQ5JQF8
HPRD15178
IPIIPI00217142   
Protein Interaction databases
DIP (DOE-UCLA)Q5JQF8
IntAct (EBI)Q5JQF8
FunCoupENSG00000186288
BioGRIDPABPC1L2A
STRING (EMBL)PABPC1L2A
ZODIACPABPC1L2A
Ontologies - Pathways
QuickGOQ5JQF8
Ontology : AmiGORNA binding  extracellular exosome  
Ontology : EGO-EBIRNA binding  extracellular exosome  
Pathways : KEGGRNA transport    mRNA surveillance pathway    RNA degradation   
NDEx NetworkPABPC1L2A
Atlas of Cancer Signalling NetworkPABPC1L2A
Wikipedia pathwaysPABPC1L2A
Orthology - Evolution
OrthoDB340529
GeneTree (enSembl)ENSG00000186288
Phylogenetic Trees/Animal Genes : TreeFamPABPC1L2A
HOVERGENQ5JQF8
HOGENOMQ5JQF8
Homologs : HomoloGenePABPC1L2A
Homology/Alignments : Family Browser (UCSC)PABPC1L2A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPABPC1L2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PABPC1L2A
dbVarPABPC1L2A
ClinVarPABPC1L2A
1000_GenomesPABPC1L2A 
Exome Variant ServerPAJP1L2A
ExAC (Exome Aggregation Consortium)PABPC1L2A (select the gene name)
Genetic variants : HAPMAP340529
Genomic Variants (DGV)PABPC1L2A [DGVbeta]
DECIPHERPABPC1L2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPABPC1L2A 
Mutations
ICGC Data PortalPABPC1L2A 
TCGA Data PortalPABPC1L2A 
Broad Tumor PortalPABPC1L2A
OASIS PortalPABPC1L2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPABPC1L2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPABPC1L2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PABPC1L2A
DgiDB (Drug Gene Interaction Database)PABPC1L2A
DoCM (Curated mutations)PABPC1L2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PABPC1L2A (select a term)
intoGenPABPC1L2A
Cancer3DPABPC1L2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPABPC1L2A
Genetic Testing Registry PABPC1L2A
NextProtQ5JQF8 [Medical]
TSGene340529
GENETestsPABPC1L2A
Target ValidationPABPC1L2A
Huge Navigator PABPC1L2A [HugePedia]
snp3D : Map Gene to Disease340529
BioCentury BCIQPABPC1L2A
ClinGenPABPC1L2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340529
Chemical/Pharm GKB GenePA162398587
Clinical trialPABPC1L2A
Miscellaneous
canSAR (ICR)PABPC1L2A (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePABPC1L2A
EVEXPABPC1L2A
GoPubMedPABPC1L2A
iHOPPABPC1L2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:51 CEST 2017

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