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PABPC1L2B (poly(A) binding protein cytoplasmic 1 like 2B)

Identity

Alias_namesRBM32B
RNA binding motif protein 32B
poly(A) binding protein, cytoplasmic 1-like 2B
Other alias
HGNC (Hugo) PABPC1L2B
LocusID (NCBI) 645974
Atlas_Id 71614
Location Xq13.2  [Link to chromosome band Xq13]
Location_base_pair Starts at 73003513 and ends at 73005712 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PABPC1L2B   31852
Cards
Entrez_Gene (NCBI)PABPC1L2B  645974  poly(A) binding protein cytoplasmic 1 like 2B
AliasesRBM32B
GeneCards (Weizmann)PABPC1L2B
Ensembl hg19 (Hinxton)ENSG00000184388 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184388 [Gene_View]  chrX:73003513-73005712 [Contig_View]  PABPC1L2B [Vega]
ICGC DataPortalENSG00000184388
TCGA cBioPortalPABPC1L2B
AceView (NCBI)PABPC1L2B
Genatlas (Paris)PABPC1L2B
WikiGenes645974
SOURCE (Princeton)PABPC1L2B
Genetics Home Reference (NIH)PABPC1L2B
Genomic and cartography
GoldenPath hg38 (UCSC)PABPC1L2B  -     chrX:73003513-73005712 +  Xq13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PABPC1L2B  -     Xq13.2   [Description]    (hg19-Feb_2009)
EnsemblPABPC1L2B - Xq13.2 [CytoView hg19]  PABPC1L2B - Xq13.2 [CytoView hg38]
Mapping of homologs : NCBIPABPC1L2B [Mapview hg19]  PABPC1L2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC041956 BC136492
RefSeq transcript (Entrez)NM_001042506
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PABPC1L2B
Cluster EST : UnigeneHs.567854 [ NCBI ]
CGAP (NCI)Hs.567854
Alternative Splicing GalleryENSG00000184388
Gene ExpressionPABPC1L2B [ NCBI-GEO ]   PABPC1L2B [ EBI - ARRAY_EXPRESS ]   PABPC1L2B [ SEEK ]   PABPC1L2B [ MEM ]
Gene Expression Viewer (FireBrowse)PABPC1L2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645974
GTEX Portal (Tissue expression)PABPC1L2B
Human Protein AtlasENSG00000184388-PABPC1L2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JQF8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JQF8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JQF8
Splice isoforms : SwissVarQ5JQF8
PhosPhoSitePlusQ5JQF8
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)PABPC1L2B
DMDM Disease mutations645974
Blocks (Seattle)PABPC1L2B
SuperfamilyQ5JQF8
Human Protein Atlas [tissue]ENSG00000184388-PABPC1L2B [tissue]
Peptide AtlasQ5JQF8
Protein Interaction databases
DIP (DOE-UCLA)Q5JQF8
IntAct (EBI)Q5JQF8
FunCoupENSG00000184388
BioGRIDPABPC1L2B
STRING (EMBL)PABPC1L2B
ZODIACPABPC1L2B
Ontologies - Pathways
QuickGOQ5JQF8
Ontology : AmiGORNA binding  extracellular exosome  
Ontology : EGO-EBIRNA binding  extracellular exosome  
Pathways : KEGGRNA transport    mRNA surveillance pathway    RNA degradation   
NDEx NetworkPABPC1L2B
Atlas of Cancer Signalling NetworkPABPC1L2B
Wikipedia pathwaysPABPC1L2B
Orthology - Evolution
OrthoDB645974
GeneTree (enSembl)ENSG00000184388
Phylogenetic Trees/Animal Genes : TreeFamPABPC1L2B
HOVERGENQ5JQF8
HOGENOMQ5JQF8
Homologs : HomoloGenePABPC1L2B
Homology/Alignments : Family Browser (UCSC)PABPC1L2B
Gene fusions - Rearrangements
Tumor Fusion PortalPABPC1L2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPABPC1L2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PABPC1L2B
dbVarPABPC1L2B
ClinVarPABPC1L2B
1000_GenomesPABPC1L2B 
Exome Variant ServerPABPC1L2B
ExAC (Exome Aggregation Consortium)ENSG00000184388
GNOMAD BrowserENSG00000184388
Genetic variants : HAPMAP645974
Genomic Variants (DGV)PABPC1L2B [DGVbeta]
DECIPHERPABPC1L2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPABPC1L2B 
Mutations
ICGC Data PortalPABPC1L2B 
TCGA Data PortalPABPC1L2B 
Broad Tumor PortalPABPC1L2B
OASIS PortalPABPC1L2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPABPC1L2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPABPC1L2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PABPC1L2B
DgiDB (Drug Gene Interaction Database)PABPC1L2B
DoCM (Curated mutations)PABPC1L2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PABPC1L2B (select a term)
intoGenPABPC1L2B
Cancer3DPABPC1L2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPABPC1L2B
MedgenPABPC1L2B
Genetic Testing Registry PABPC1L2B
NextProtQ5JQF8 [Medical]
TSGene645974
GENETestsPABPC1L2B
Target ValidationPABPC1L2B
Huge Navigator PABPC1L2B [HugePedia]
snp3D : Map Gene to Disease645974
BioCentury BCIQPABPC1L2B
ClinGenPABPC1L2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645974
Chemical/Pharm GKB GenePA162398594
Clinical trialPABPC1L2B
Miscellaneous
canSAR (ICR)PABPC1L2B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePABPC1L2B
EVEXPABPC1L2B
GoPubMedPABPC1L2B
iHOPPABPC1L2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:06:05 CET 2017

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