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PABPC3 (poly(A) binding protein cytoplasmic 3)

Identity

Alias_namesPABPL3
poly(A)-binding protein, cytoplasmic 3
Alias_symbol (synonym)PABP3
tPABP
Other alias
HGNC (Hugo) PABPC3
LocusID (NCBI) 5042
Atlas_Id 71617
Location 13q12.13  [Link to chromosome band 13q12]
Location_base_pair Starts at 25096138 and ends at 25098566 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PABPC3   8556
Cards
Entrez_Gene (NCBI)PABPC3  5042  poly(A) binding protein cytoplasmic 3
AliasesPABP3; PABPL3; tPABP
GeneCards (Weizmann)PABPC3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:25096138-25098566 [Contig_View]  PABPC3 [Vega]
TCGA cBioPortalPABPC3
AceView (NCBI)PABPC3
Genatlas (Paris)PABPC3
WikiGenes5042
SOURCE (Princeton)PABPC3
Genetics Home Reference (NIH)PABPC3
Genomic and cartography
GoldenPath hg38 (UCSC)PABPC3  -     chr13:25096138-25098566 +  13q12.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PABPC3  -     13q12.13   [Description]    (hg19-Feb_2009)
EnsemblPABPC3 - 13q12.13 [CytoView hg19]  PABPC3 - 13q12.13 [CytoView hg38]
Mapping of homologs : NCBIPABPC3 [Mapview hg19]  PABPC3 [Mapview hg38]
OMIM604680   
Gene and transcription
Genbank (Entrez)AA954581 AF132026 AK313336 AL136900 BC027617
RefSeq transcript (Entrez)NM_030979
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PABPC3
Cluster EST : UnigeneHs.458280 [ NCBI ]
CGAP (NCI)Hs.458280
Gene ExpressionPABPC3 [ NCBI-GEO ]   PABPC3 [ EBI - ARRAY_EXPRESS ]   PABPC3 [ SEEK ]   PABPC3 [ MEM ]
Gene Expression Viewer (FireBrowse)PABPC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5042
GTEX Portal (Tissue expression)PABPC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H361   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H361  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H361
Splice isoforms : SwissVarQ9H361
PhosPhoSitePlusQ9H361
Domaine pattern : Prosite (Expaxy)PABC (PS51309)    RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    PABP_1234    PABP_HYD    RRM_dom    RRM_dom_euk   
Domain families : Pfam (Sanger)PABP (PF00658)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00658    pfam00076   
Domain families : Smart (EMBL)PolyA (SM00517)  RRM (SM00360)  RRM_1 (SM00361)  
Conserved Domain (NCBI)PABPC3
DMDM Disease mutations5042
Blocks (Seattle)PABPC3
PDB (SRS)2D9P    4IVE   
PDB (PDBSum)2D9P    4IVE   
PDB (IMB)2D9P    4IVE   
PDB (RSDB)2D9P    4IVE   
Structural Biology KnowledgeBase2D9P    4IVE   
SCOP (Structural Classification of Proteins)2D9P    4IVE   
CATH (Classification of proteins structures)2D9P    4IVE   
SuperfamilyQ9H361
Peptide AtlasQ9H361
HPRD05248
IPIIPI00301154   
Protein Interaction databases
DIP (DOE-UCLA)Q9H361
IntAct (EBI)Q9H361
BioGRIDPABPC3
STRING (EMBL)PABPC3
ZODIACPABPC3
Ontologies - Pathways
QuickGOQ9H361
Ontology : AmiGOcytoplasm  cytosol  poly(A) binding  mRNA metabolic process  extracellular exosome  
Ontology : EGO-EBIcytoplasm  cytosol  poly(A) binding  mRNA metabolic process  extracellular exosome  
Pathways : KEGGRNA transport    mRNA surveillance pathway    RNA degradation   
NDEx NetworkPABPC3
Atlas of Cancer Signalling NetworkPABPC3
Wikipedia pathwaysPABPC3
Orthology - Evolution
OrthoDB5042
Phylogenetic Trees/Animal Genes : TreeFamPABPC3
HOVERGENQ9H361
HOGENOMQ9H361
Homologs : HomoloGenePABPC3
Homology/Alignments : Family Browser (UCSC)PABPC3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPABPC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PABPC3
dbVarPABPC3
ClinVarPABPC3
1000_GenomesPABPC3 
Exome Variant ServerPABPC3
ExAC (Exome Aggregation Consortium)PABPC3 (select the gene name)
Genetic variants : HAPMAP5042
Genomic Variants (DGV)PABPC3 [DGVbeta]
DECIPHERPABPC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPABPC3 
Mutations
ICGC Data PortalPABPC3 
TCGA Data PortalPABPC3 
Broad Tumor PortalPABPC3
OASIS PortalPABPC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPABPC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPABPC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PABPC3
DgiDB (Drug Gene Interaction Database)PABPC3
DoCM (Curated mutations)PABPC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PABPC3 (select a term)
intoGenPABPC3
Cancer3DPABPC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604680   
Orphanet
MedgenPABPC3
Genetic Testing Registry PABPC3
NextProtQ9H361 [Medical]
TSGene5042
GENETestsPABPC3
Target ValidationPABPC3
Huge Navigator PABPC3 [HugePedia]
snp3D : Map Gene to Disease5042
BioCentury BCIQPABPC3
ClinGenPABPC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5042
Chemical/Pharm GKB GenePA32882
Clinical trialPABPC3
Miscellaneous
canSAR (ICR)PABPC3 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePABPC3
EVEXPABPC3
GoPubMedPABPC3
iHOPPABPC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:23 CEST 2017

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