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PABPC4L (poly(A) binding protein cytoplasmic 4 like)

Identity

Alias_namespoly(A) binding protein, cytoplasmic 4-like
Other alias-
HGNC (Hugo) PABPC4L
LocusID (NCBI) 132430
Atlas_Id 71618
Location 4q28.3  [Link to chromosome band 4q28]
Location_base_pair Starts at 134196334 and ends at 134201748 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PABPC4L   31955
Cards
Entrez_Gene (NCBI)PABPC4L  132430  poly(A) binding protein cytoplasmic 4 like
Aliases
GeneCards (Weizmann)PABPC4L
Ensembl hg19 (Hinxton)ENSG00000254535 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254535 [Gene_View]  chr4:134196334-134201748 [Contig_View]  PABPC4L [Vega]
ICGC DataPortalENSG00000254535
TCGA cBioPortalPABPC4L
AceView (NCBI)PABPC4L
Genatlas (Paris)PABPC4L
WikiGenes132430
SOURCE (Princeton)PABPC4L
Genetics Home Reference (NIH)PABPC4L
Genomic and cartography
GoldenPath hg38 (UCSC)PABPC4L  -     chr4:134196334-134201748 -  4q28.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PABPC4L  -     4q28.3   [Description]    (hg19-Feb_2009)
EnsemblPABPC4L - 4q28.3 [CytoView hg19]  PABPC4L - 4q28.3 [CytoView hg38]
Mapping of homologs : NCBIPABPC4L [Mapview hg19]  PABPC4L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY672099 BX648831 DR005318
RefSeq transcript (Entrez)NM_001114734
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PABPC4L
Cluster EST : UnigeneHs.49889 [ NCBI ]
CGAP (NCI)Hs.49889
Alternative Splicing GalleryENSG00000254535
Gene ExpressionPABPC4L [ NCBI-GEO ]   PABPC4L [ EBI - ARRAY_EXPRESS ]   PABPC4L [ SEEK ]   PABPC4L [ MEM ]
Gene Expression Viewer (FireBrowse)PABPC4L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132430
GTEX Portal (Tissue expression)PABPC4L
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CB38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CB38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CB38
Splice isoforms : SwissVarP0CB38
PhosPhoSitePlusP0CB38
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    PABP_1234    RRM_dom    RRM_dom_euk   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  RRM_1 (SM00361)  
Conserved Domain (NCBI)PABPC4L
DMDM Disease mutations132430
Blocks (Seattle)PABPC4L
SuperfamilyP0CB38
Human Protein AtlasENSG00000254535
Peptide AtlasP0CB38
IPIIPI00885166   
Protein Interaction databases
DIP (DOE-UCLA)P0CB38
IntAct (EBI)P0CB38
FunCoupENSG00000254535
BioGRIDPABPC4L
STRING (EMBL)PABPC4L
ZODIACPABPC4L
Ontologies - Pathways
QuickGOP0CB38
Ontology : AmiGORNA binding  
Ontology : EGO-EBIRNA binding  
Pathways : KEGGRNA transport    mRNA surveillance pathway    RNA degradation   
NDEx NetworkPABPC4L
Atlas of Cancer Signalling NetworkPABPC4L
Wikipedia pathwaysPABPC4L
Orthology - Evolution
OrthoDB132430
GeneTree (enSembl)ENSG00000254535
Phylogenetic Trees/Animal Genes : TreeFamPABPC4L
HOVERGENP0CB38
HOGENOMP0CB38
Homologs : HomoloGenePABPC4L
Homology/Alignments : Family Browser (UCSC)PABPC4L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPABPC4L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PABPC4L
dbVarPABPC4L
ClinVarPABPC4L
1000_GenomesPABPC4L 
Exome Variant ServerPABPC4L
ExAC (Exome Aggregation Consortium)PABPC4L (select the gene name)
Genetic variants : HAPMAP132430
Genomic Variants (DGV)PABPC4L [DGVbeta]
DECIPHERPABPC4L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPABPC4L 
Mutations
ICGC Data PortalPABPC4L 
TCGA Data PortalPABPC4L 
Broad Tumor PortalPABPC4L
OASIS PortalPABPC4L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPABPC4L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPABPC4L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PABPC4L
DgiDB (Drug Gene Interaction Database)PABPC4L
DoCM (Curated mutations)PABPC4L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PABPC4L (select a term)
intoGenPABPC4L
Cancer3DPABPC4L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPABPC4L
Genetic Testing Registry PABPC4L
NextProtP0CB38 [Medical]
TSGene132430
GENETestsPABPC4L
Target ValidationPABPC4L
Huge Navigator PABPC4L [HugePedia]
snp3D : Map Gene to Disease132430
BioCentury BCIQPABPC4L
ClinGenPABPC4L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132430
Chemical/Pharm GKB GenePA142671211
Clinical trialPABPC4L
Miscellaneous
canSAR (ICR)PABPC4L (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePABPC4L
EVEXPABPC4L
GoPubMedPABPC4L
iHOPPABPC4L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:23 CEST 2017

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