Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PABPC5-AS1 (PABPC5 antisense RNA 1)

Identity

Alias_namesCXorf46
chromosome X open reading frame 46
PABPC5 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)OTTHUMG00000021960
Other alias
HGNC (Hugo) PABPC5-AS1
LocusID (NCBI) 102724167
Atlas_Id 71619
Location Xq21.31  [Link to chromosome band Xq21]
Location_base_pair Starts at 91414903 and ends at 91434999 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PABPC5-AS1   31845
Cards
Entrez_Gene (NCBI)PABPC5-AS1  102724167  PABPC5 antisense RNA 1
AliasesCXorf46
GeneCards (Weizmann)PABPC5-AS1
Ensembl hg19 (Hinxton)ENSG00000234161 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234161 [Gene_View]  chrX:91414903-91434999 [Contig_View]  PABPC5-AS1 [Vega]
ICGC DataPortalENSG00000234161
TCGA cBioPortalPABPC5-AS1
AceView (NCBI)PABPC5-AS1
Genatlas (Paris)PABPC5-AS1
WikiGenes102724167
SOURCE (Princeton)PABPC5-AS1
Genetics Home Reference (NIH)PABPC5-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PABPC5-AS1  -     chrX:91414903-91434999 -  Xq21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PABPC5-AS1  -     Xq21.31   [Description]    (hg19-Feb_2009)
EnsemblPABPC5-AS1 - Xq21.31 [CytoView hg19]  PABPC5-AS1 - Xq21.31 [CytoView hg38]
Mapping of homologs : NCBIPABPC5-AS1 [Mapview hg19]  PABPC5-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW161363 DR033788
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PABPC5-AS1
Cluster EST : UnigeneHs.571694 [ NCBI ]
CGAP (NCI)Hs.571694
Alternative Splicing GalleryENSG00000234161
Gene ExpressionPABPC5-AS1 [ NCBI-GEO ]   PABPC5-AS1 [ EBI - ARRAY_EXPRESS ]   PABPC5-AS1 [ SEEK ]   PABPC5-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PABPC5-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102724167
GTEX Portal (Tissue expression)PABPC5-AS1
Human Protein AtlasENSG00000234161-PABPC5-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PABPC5-AS1
DMDM Disease mutations102724167
Blocks (Seattle)PABPC5-AS1
Human Protein Atlas [tissue]ENSG00000234161-PABPC5-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000234161
BioGRIDPABPC5-AS1
STRING (EMBL)PABPC5-AS1
ZODIACPABPC5-AS1
Ontologies - Pathways
Huge Navigator PABPC5-AS1 [HugePedia]
snp3D : Map Gene to Disease102724167
BioCentury BCIQPABPC5-AS1
ClinGenPABPC5-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724167
Clinical trialPABPC5-AS1
Miscellaneous
canSAR (ICR)PABPC5-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePABPC5-AS1
EVEXPABPC5-AS1
GoPubMedPABPC5-AS1
iHOPPABPC5-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:00:19 CET 2017

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