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PABPC5 (poly(A) binding protein cytoplasmic 5)

Identity

Alias_namespoly(A)-binding protein
Alias_symbol (synonym)PABP5
Other alias
HGNC (Hugo) PABPC5
LocusID (NCBI) 140886
Atlas_Id 53419
Location Xq21.31  [Link to chromosome band Xq21]
Location_base_pair Starts at 91434598 and ends at 91438584 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PABPC5   13629
Cards
Entrez_Gene (NCBI)PABPC5  140886  poly(A) binding protein cytoplasmic 5
AliasesPABP5
GeneCards (Weizmann)PABPC5
Ensembl hg19 (Hinxton)ENSG00000174740 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174740 [Gene_View]  chrX:91434598-91438584 [Contig_View]  PABPC5 [Vega]
ICGC DataPortalENSG00000174740
TCGA cBioPortalPABPC5
AceView (NCBI)PABPC5
Genatlas (Paris)PABPC5
WikiGenes140886
SOURCE (Princeton)PABPC5
Genetics Home Reference (NIH)PABPC5
Genomic and cartography
GoldenPath hg38 (UCSC)PABPC5  -     chrX:91434598-91438584 +  Xq21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PABPC5  -     Xq21.31   [Description]    (hg19-Feb_2009)
EnsemblPABPC5 - Xq21.31 [CytoView hg19]  PABPC5 - Xq21.31 [CytoView hg38]
Mapping of homologs : NCBIPABPC5 [Mapview hg19]  PABPC5 [Mapview hg38]
OMIM300407   
Gene and transcription
Genbank (Entrez)AK290105 AK297327 AL122118 BC063113 HQ447581
RefSeq transcript (Entrez)NM_080832
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PABPC5
Cluster EST : UnigeneHs.246590 [ NCBI ]
CGAP (NCI)Hs.246590
Alternative Splicing GalleryENSG00000174740
Gene ExpressionPABPC5 [ NCBI-GEO ]   PABPC5 [ EBI - ARRAY_EXPRESS ]   PABPC5 [ SEEK ]   PABPC5 [ MEM ]
Gene Expression Viewer (FireBrowse)PABPC5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140886
GTEX Portal (Tissue expression)PABPC5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DU9
Splice isoforms : SwissVarQ96DU9
PhosPhoSitePlusQ96DU9
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    PABP_1234    RRM_dom    RRM_dom_euk   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  RRM_1 (SM00361)  
Conserved Domain (NCBI)PABPC5
DMDM Disease mutations140886
Blocks (Seattle)PABPC5
SuperfamilyQ96DU9
Human Protein AtlasENSG00000174740
Peptide AtlasQ96DU9
HPRD02324
IPIIPI00061206   IPI00647470   
Protein Interaction databases
DIP (DOE-UCLA)Q96DU9
IntAct (EBI)Q96DU9
FunCoupENSG00000174740
BioGRIDPABPC5
STRING (EMBL)PABPC5
ZODIACPABPC5
Ontologies - Pathways
QuickGOQ96DU9
Ontology : AmiGORNA binding  mitochondrial matrix  
Ontology : EGO-EBIRNA binding  mitochondrial matrix  
Pathways : KEGGRNA transport    mRNA surveillance pathway    RNA degradation   
NDEx NetworkPABPC5
Atlas of Cancer Signalling NetworkPABPC5
Wikipedia pathwaysPABPC5
Orthology - Evolution
OrthoDB140886
GeneTree (enSembl)ENSG00000174740
Phylogenetic Trees/Animal Genes : TreeFamPABPC5
HOVERGENQ96DU9
HOGENOMQ96DU9
Homologs : HomoloGenePABPC5
Homology/Alignments : Family Browser (UCSC)PABPC5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPABPC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PABPC5
dbVarPABPC5
ClinVarPABPC5
1000_GenomesPABPC5 
Exome Variant ServerPABPC5
ExAC (Exome Aggregation Consortium)PABPC5 (select the gene name)
Genetic variants : HAPMAP140886
Genomic Variants (DGV)PABPC5 [DGVbeta]
DECIPHERPABPC5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPABPC5 
Mutations
ICGC Data PortalPABPC5 
TCGA Data PortalPABPC5 
Broad Tumor PortalPABPC5
OASIS PortalPABPC5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPABPC5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPABPC5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch PABPC5
DgiDB (Drug Gene Interaction Database)PABPC5
DoCM (Curated mutations)PABPC5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PABPC5 (select a term)
intoGenPABPC5
Cancer3DPABPC5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300407   
Orphanet
MedgenPABPC5
Genetic Testing Registry PABPC5
NextProtQ96DU9 [Medical]
TSGene140886
GENETestsPABPC5
Target ValidationPABPC5
Huge Navigator PABPC5 [HugePedia]
snp3D : Map Gene to Disease140886
BioCentury BCIQPABPC5
ClinGenPABPC5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140886
Chemical/Pharm GKB GenePA32884
Clinical trialPABPC5
Miscellaneous
canSAR (ICR)PABPC5 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePABPC5
EVEXPABPC5
GoPubMedPABPC5
iHOPPABPC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:48:19 CEST 2017

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