Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PABPN1L (poly(A) binding protein nuclear 1 like, cytoplasmic)

Identity

Alias_namespoly(A) binding protein nuclear 1 like (cytoplasmic)
Alias_symbol (synonym)ePABP2
Other aliasPABPNL1
HGNC (Hugo) PABPN1L
LocusID (NCBI) 390748
Atlas_Id 71620
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 88863340 and ends at 88866660 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PABPN1L   37237
Cards
Entrez_Gene (NCBI)PABPN1L  390748  poly(A) binding protein nuclear 1 like, cytoplasmic
AliasesPABPNL1; ePABP2
GeneCards (Weizmann)PABPN1L
Ensembl hg19 (Hinxton)ENSG00000205022 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205022 [Gene_View]  chr16:88863340-88866660 [Contig_View]  PABPN1L [Vega]
ICGC DataPortalENSG00000205022
TCGA cBioPortalPABPN1L
AceView (NCBI)PABPN1L
Genatlas (Paris)PABPN1L
WikiGenes390748
SOURCE (Princeton)PABPN1L
Genetics Home Reference (NIH)PABPN1L
Genomic and cartography
GoldenPath hg38 (UCSC)PABPN1L  -     chr16:88863340-88866660 -  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PABPN1L  -     16q24.3   [Description]    (hg19-Feb_2009)
EnsemblPABPN1L - 16q24.3 [CytoView hg19]  PABPN1L - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBIPABPN1L [Mapview hg19]  PABPN1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC130001 BC130002 BC148673 BC156595 EU190484
RefSeq transcript (Entrez)NM_001080487 NM_001294328
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PABPN1L
Cluster EST : UnigeneHs.730522 [ NCBI ]
CGAP (NCI)Hs.730522
Alternative Splicing GalleryENSG00000205022
Gene ExpressionPABPN1L [ NCBI-GEO ]   PABPN1L [ EBI - ARRAY_EXPRESS ]   PABPN1L [ SEEK ]   PABPN1L [ MEM ]
Gene Expression Viewer (FireBrowse)PABPN1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390748
GTEX Portal (Tissue expression)PABPN1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDY0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDY0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDY0
Splice isoforms : SwissVarA6NDY0
PhosPhoSitePlusA6NDY0
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)PABPN1L
DMDM Disease mutations390748
Blocks (Seattle)PABPN1L
SuperfamilyA6NDY0
Human Protein AtlasENSG00000205022
Peptide AtlasA6NDY0
IPIIPI00375983   IPI00854628   IPI01021917   IPI00942797   IPI00902961   
Protein Interaction databases
DIP (DOE-UCLA)A6NDY0
IntAct (EBI)A6NDY0
FunCoupENSG00000205022
BioGRIDPABPN1L
STRING (EMBL)PABPN1L
ZODIACPABPN1L
Ontologies - Pathways
QuickGOA6NDY0
Ontology : AmiGORNA binding  cytoplasm  
Ontology : EGO-EBIRNA binding  cytoplasm  
Pathways : KEGGmRNA surveillance pathway    Influenza A   
NDEx NetworkPABPN1L
Atlas of Cancer Signalling NetworkPABPN1L
Wikipedia pathwaysPABPN1L
Orthology - Evolution
OrthoDB390748
GeneTree (enSembl)ENSG00000205022
Phylogenetic Trees/Animal Genes : TreeFamPABPN1L
HOVERGENA6NDY0
HOGENOMA6NDY0
Homologs : HomoloGenePABPN1L
Homology/Alignments : Family Browser (UCSC)PABPN1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPABPN1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PABPN1L
dbVarPABPN1L
ClinVarPABPN1L
1000_GenomesPABPN1L 
Exome Variant ServerPABPN1L
ExAC (Exome Aggregation Consortium)PABPN1L (select the gene name)
Genetic variants : HAPMAP390748
Genomic Variants (DGV)PABPN1L [DGVbeta]
DECIPHERPABPN1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPABPN1L 
Mutations
ICGC Data PortalPABPN1L 
TCGA Data PortalPABPN1L 
Broad Tumor PortalPABPN1L
OASIS PortalPABPN1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPABPN1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPABPN1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PABPN1L
DgiDB (Drug Gene Interaction Database)PABPN1L
DoCM (Curated mutations)PABPN1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PABPN1L (select a term)
intoGenPABPN1L
Cancer3DPABPN1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPABPN1L
Genetic Testing Registry PABPN1L
NextProtA6NDY0 [Medical]
TSGene390748
GENETestsPABPN1L
Target ValidationPABPN1L
Huge Navigator PABPN1L [HugePedia]
snp3D : Map Gene to Disease390748
BioCentury BCIQPABPN1L
ClinGenPABPN1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390748
Chemical/Pharm GKB GenePA165450439
Clinical trialPABPN1L
Miscellaneous
canSAR (ICR)PABPN1L (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePABPN1L
EVEXPABPN1L
GoPubMedPABPN1L
iHOPPABPN1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:33:51 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.