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PACERR (PTGS2 antisense NFKB1 complex-mediated expression regulator RNA)

Identity

Alias_symbol (synonym)PACER
PTGS2-AS1
Other alias
HGNC (Hugo) PACERR
LocusID (NCBI) 103752588
Atlas_Id 71621
Location 1q31.1  [Link to chromosome band 1q31]
Location_base_pair Starts at 186649786 and ends at 186650578 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PACERR   50552
Cards
Entrez_Gene (NCBI)PACERR  103752588  PTGS2 antisense NFKB1 complex-mediated expression regulator RNA
AliasesPACER; PTGS2-AS1
GeneCards (Weizmann)PACERR
Ensembl hg19 (Hinxton)ENSG00000273129 [Gene_View]  chr1:186649786-186650578 [Contig_View]  PACERR [Vega]
Ensembl hg38 (Hinxton)ENSG00000273129 [Gene_View]  chr1:186649786-186650578 [Contig_View]  PACERR [Vega]
ICGC DataPortalENSG00000273129
TCGA cBioPortalPACERR
AceView (NCBI)PACERR
Genatlas (Paris)PACERR
WikiGenes103752588
SOURCE (Princeton)PACERR
Genetics Home Reference (NIH)PACERR
Genomic and cartography
GoldenPath hg19 (UCSC)PACERR  -     chr1:186649786-186650578 +  1q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PACERR  -     1q31.1   [Description]    (hg38-Dec_2013)
EnsemblPACERR - 1q31.1 [CytoView hg19]  PACERR - 1q31.1 [CytoView hg38]
Mapping of homologs : NCBIPACERR [Mapview hg19]  PACERR [Mapview hg38]
Gene and transcription
Genbank (Entrez)BU733503 HG493015
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_028206 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)PACERR
Cluster EST : UnigeneHs.441636 [ NCBI ]
CGAP (NCI)Hs.441636
Alternative Splicing GalleryENSG00000273129
Gene ExpressionPACERR [ NCBI-GEO ]   PACERR [ EBI - ARRAY_EXPRESS ]   PACERR [ SEEK ]   PACERR [ MEM ]
Gene Expression Viewer (FireBrowse)PACERR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)103752588
GTEX Portal (Tissue expression)PACERR
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PACERR
DMDM Disease mutations103752588
Blocks (Seattle)PACERR
Human Protein AtlasENSG00000273129
Protein Interaction databases
FunCoupENSG00000273129
BioGRIDPACERR
STRING (EMBL)PACERR
ZODIACPACERR
Ontologies - Pathways
Huge Navigator PACERR [HugePedia]
snp3D : Map Gene to Disease103752588
BioCentury BCIQPACERR
ClinGenPACERR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD103752588
Clinical trialPACERR
Miscellaneous
canSAR (ICR)PACERR (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePACERR
EVEXPACERR
GoPubMedPACERR
iHOPPACERR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:37:39 CET 2017

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