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PACRGL (parkin coregulated like)

Identity

Alias_namesC4orf28
chromosome 4 open reading frame 28
Alias_symbol (synonym)MGC29898
Other alias
HGNC (Hugo) PACRGL
LocusID (NCBI) 133015
Atlas_Id 71623
Location 4p15.31  [Link to chromosome band 4p15]
Location_base_pair Starts at 20700413 and ends at 20732556 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CD99L2 (Xq28) / PACRGL (4p15.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PACRGL   28442
Cards
Entrez_Gene (NCBI)PACRGL  133015  parkin coregulated like
AliasesC4orf28
GeneCards (Weizmann)PACRGL
Ensembl hg19 (Hinxton)ENSG00000163138 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163138 [Gene_View]  chr4:20700413-20732556 [Contig_View]  PACRGL [Vega]
ICGC DataPortalENSG00000163138
TCGA cBioPortalPACRGL
AceView (NCBI)PACRGL
Genatlas (Paris)PACRGL
WikiGenes133015
SOURCE (Princeton)PACRGL
Genetics Home Reference (NIH)PACRGL
Genomic and cartography
GoldenPath hg38 (UCSC)PACRGL  -     chr4:20700413-20732556 +  4p15.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PACRGL  -     4p15.31   [Description]    (hg19-Feb_2009)
EnsemblPACRGL - 4p15.31 [CytoView hg19]  PACRGL - 4p15.31 [CytoView hg38]
Mapping of homologs : NCBIPACRGL [Mapview hg19]  PACRGL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098692 AK291544 AK294077 AK297556 AK307092
RefSeq transcript (Entrez)NM_001130727 NM_001258345 NM_001258346 NM_001317849 NM_001330745 NM_001330746 NM_001330747 NM_001330748 NM_145048
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PACRGL
Cluster EST : UnigeneHs.657547 [ NCBI ]
CGAP (NCI)Hs.657547
Alternative Splicing GalleryENSG00000163138
Gene ExpressionPACRGL [ NCBI-GEO ]   PACRGL [ EBI - ARRAY_EXPRESS ]   PACRGL [ SEEK ]   PACRGL [ MEM ]
Gene Expression Viewer (FireBrowse)PACRGL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)133015
GTEX Portal (Tissue expression)PACRGL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7B6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7B6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7B6
Splice isoforms : SwissVarQ8N7B6
PhosPhoSitePlusQ8N7B6
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Parkin_co-regulated_protein   
Domain families : Pfam (Sanger)ParcG (PF10274)   
Domain families : Pfam (NCBI)pfam10274   
Conserved Domain (NCBI)PACRGL
DMDM Disease mutations133015
Blocks (Seattle)PACRGL
SuperfamilyQ8N7B6
Human Protein AtlasENSG00000163138
Peptide AtlasQ8N7B6
HPRD14537
IPIIPI00297683   IPI00478060   IPI00967099   IPI00967323   IPI00964698   IPI00964758   IPI00965559   IPI00909252   IPI00967307   IPI00966231   IPI00963875   IPI00964149   IPI00965789   IPI00963958   IPI00964510   IPI00965538   IPI00965296   IPI00967394   IPI00966543   IPI00964228   IPI00966067   IPI00965020   IPI00967104   IPI00965184   IPI00968198   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7B6
IntAct (EBI)Q8N7B6
FunCoupENSG00000163138
BioGRIDPACRGL
STRING (EMBL)PACRGL
ZODIACPACRGL
Ontologies - Pathways
QuickGOQ8N7B6
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkPACRGL
Atlas of Cancer Signalling NetworkPACRGL
Wikipedia pathwaysPACRGL
Orthology - Evolution
OrthoDB133015
GeneTree (enSembl)ENSG00000163138
Phylogenetic Trees/Animal Genes : TreeFamPACRGL
HOVERGENQ8N7B6
HOGENOMQ8N7B6
Homologs : HomoloGenePACRGL
Homology/Alignments : Family Browser (UCSC)PACRGL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPACRGL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PACRGL
dbVarPACRGL
ClinVarPACRGL
1000_GenomesPACRGL 
Exome Variant ServerPACRGL
ExAC (Exome Aggregation Consortium)PACRGL (select the gene name)
Genetic variants : HAPMAP133015
Genomic Variants (DGV)PACRGL [DGVbeta]
DECIPHERPACRGL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPACRGL 
Mutations
ICGC Data PortalPACRGL 
TCGA Data PortalPACRGL 
Broad Tumor PortalPACRGL
OASIS PortalPACRGL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPACRGL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPACRGL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PACRGL
DgiDB (Drug Gene Interaction Database)PACRGL
DoCM (Curated mutations)PACRGL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PACRGL (select a term)
intoGenPACRGL
Cancer3DPACRGL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPACRGL
Genetic Testing Registry PACRGL
NextProtQ8N7B6 [Medical]
TSGene133015
GENETestsPACRGL
Huge Navigator PACRGL [HugePedia]
snp3D : Map Gene to Disease133015
BioCentury BCIQPACRGL
ClinGenPACRGL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD133015
Chemical/Pharm GKB GenePA164724318
Clinical trialPACRGL
Miscellaneous
canSAR (ICR)PACRGL (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePACRGL
EVEXPACRGL
GoPubMedPACRGL
iHOPPACRGL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:47:39 CEST 2017

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