Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PADI1 (peptidyl arginine deiminase, type I)

Identity

Alias_namespeptidyl arginine deiminase, type I
Alias_symbol (synonym)HPAD10
PDI1
PDI
PAD1
Other alias
HGNC (Hugo) PADI1
LocusID (NCBI) 29943
Atlas_Id 71626
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 17531621 and ends at 17572501 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AUNIP (1p36.11) / PADI1 (1p36.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PADI1   18367
Cards
Entrez_Gene (NCBI)PADI1  29943  peptidyl arginine deiminase, type I
AliasesHPAD10; PAD1; PDI; PDI1
GeneCards (Weizmann)PADI1
Ensembl hg19 (Hinxton)ENSG00000142623 [Gene_View]  chr1:17531621-17572501 [Contig_View]  PADI1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000142623 [Gene_View]  chr1:17531621-17572501 [Contig_View]  PADI1 [Vega]
ICGC DataPortalENSG00000142623
TCGA cBioPortalPADI1
AceView (NCBI)PADI1
Genatlas (Paris)PADI1
WikiGenes29943
SOURCE (Princeton)PADI1
Genetics Home Reference (NIH)PADI1
Genomic and cartography
GoldenPath hg19 (UCSC)PADI1  -     chr1:17531621-17572501 +  1p36.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PADI1  -     1p36.13   [Description]    (hg38-Dec_2013)
EnsemblPADI1 - 1p36.13 [CytoView hg19]  PADI1 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBIPADI1 [Mapview hg19]  PADI1 [Mapview hg38]
OMIM607934   
Gene and transcription
Genbank (Entrez)AB033768 AK026652 AK127515 AK225541 AK293275
RefSeq transcript (Entrez)NM_013358
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289 NW_011332688
Consensus coding sequences : CCDS (NCBI)PADI1
Cluster EST : UnigeneHs.412941 [ NCBI ]
CGAP (NCI)Hs.412941
Alternative Splicing GalleryENSG00000142623
Gene ExpressionPADI1 [ NCBI-GEO ]   PADI1 [ EBI - ARRAY_EXPRESS ]   PADI1 [ SEEK ]   PADI1 [ MEM ]
Gene Expression Viewer (FireBrowse)PADI1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29943
GTEX Portal (Tissue expression)PADI1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULC6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULC6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULC6
Splice isoforms : SwissVarQ9ULC6
Catalytic activity : Enzyme3.5.3.15 [ Enzyme-Expasy ]   3.5.3.153.5.3.15 [ IntEnz-EBI ]   3.5.3.15 [ BRENDA ]   3.5.3.15 [ KEGG ]   
PhosPhoSitePlusQ9ULC6
Domains : Interpro (EBI)Cupredoxin    PAD    PAD_C    PAD_N    Prot_Arg_deaminase_cen_dom   
Domain families : Pfam (Sanger)PAD (PF03068)    PAD_M (PF08527)    PAD_N (PF08526)   
Domain families : Pfam (NCBI)pfam03068    pfam08527    pfam08526   
Conserved Domain (NCBI)PADI1
DMDM Disease mutations29943
Blocks (Seattle)PADI1
SuperfamilyQ9ULC6
Human Protein AtlasENSG00000142623
Peptide AtlasQ9ULC6
HPRD06395
IPIIPI00008040   IPI01011138   IPI00909209   IPI01011624   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULC6
IntAct (EBI)Q9ULC6
FunCoupENSG00000142623
BioGRIDPADI1
STRING (EMBL)PADI1
ZODIACPADI1
Ontologies - Pathways
QuickGOQ9ULC6
Ontology : AmiGOprotein-arginine deiminase activity  calcium ion binding  cytoplasm  protein citrullination  extracellular exosome  
Ontology : EGO-EBIprotein-arginine deiminase activity  calcium ion binding  cytoplasm  protein citrullination  extracellular exosome  
NDEx NetworkPADI1
Atlas of Cancer Signalling NetworkPADI1
Wikipedia pathwaysPADI1
Orthology - Evolution
OrthoDB29943
GeneTree (enSembl)ENSG00000142623
Phylogenetic Trees/Animal Genes : TreeFamPADI1
HOVERGENQ9ULC6
HOGENOMQ9ULC6
Homologs : HomoloGenePADI1
Homology/Alignments : Family Browser (UCSC)PADI1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPADI1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PADI1
dbVarPADI1
ClinVarPADI1
1000_GenomesPADI1 
Exome Variant ServerPADI1
ExAC (Exome Aggregation Consortium)PADI1 (select the gene name)
Genetic variants : HAPMAP29943
Genomic Variants (DGV)PADI1 [DGVbeta]
DECIPHER (Syndromes)1:17531621-17572501  ENSG00000142623
CONAN: Copy Number AnalysisPADI1 
Mutations
ICGC Data PortalPADI1 
TCGA Data PortalPADI1 
Broad Tumor PortalPADI1
OASIS PortalPADI1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPADI1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPADI1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PADI1
DgiDB (Drug Gene Interaction Database)PADI1
DoCM (Curated mutations)PADI1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PADI1 (select a term)
intoGenPADI1
Cancer3DPADI1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607934   
Orphanet
MedgenPADI1
Genetic Testing Registry PADI1
NextProtQ9ULC6 [Medical]
TSGene29943
GENETestsPADI1
Huge Navigator PADI1 [HugePedia]
snp3D : Map Gene to Disease29943
BioCentury BCIQPADI1
ClinGenPADI1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29943
Chemical/Pharm GKB GenePA32899
Clinical trialPADI1
Miscellaneous
canSAR (ICR)PADI1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePADI1
EVEXPADI1
GoPubMedPADI1
iHOPPADI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:37:40 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.