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PADI3 (peptidyl arginine deiminase, type III)

Identity

Alias_namespeptidyl arginine deiminase, type III
Alias_symbol (synonym)PDI3
Other aliasPAD3
HGNC (Hugo) PADI3
LocusID (NCBI) 51702
Atlas_Id 71627
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 17575593 and ends at 17610727 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PADI3   18337
Cards
Entrez_Gene (NCBI)PADI3  51702  peptidyl arginine deiminase, type III
AliasesPAD3; PDI3
GeneCards (Weizmann)PADI3
Ensembl hg19 (Hinxton)ENSG00000142619 [Gene_View]  chr1:17575593-17610727 [Contig_View]  PADI3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000142619 [Gene_View]  chr1:17575593-17610727 [Contig_View]  PADI3 [Vega]
ICGC DataPortalENSG00000142619
TCGA cBioPortalPADI3
AceView (NCBI)PADI3
Genatlas (Paris)PADI3
WikiGenes51702
SOURCE (Princeton)PADI3
Genetics Home Reference (NIH)PADI3
Genomic and cartography
GoldenPath hg19 (UCSC)PADI3  -     chr1:17575593-17610727 +  1p36.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PADI3  -     1p36.13   [Description]    (hg38-Dec_2013)
EnsemblPADI3 - 1p36.13 [CytoView hg19]  PADI3 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBIPADI3 [Mapview hg19]  PADI3 [Mapview hg38]
OMIM606755   
Gene and transcription
Genbank (Entrez)AB026831 BC041592 BC109091 BC109092
RefSeq transcript (Entrez)NM_016233
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289 NW_011332688
Consensus coding sequences : CCDS (NCBI)PADI3
Cluster EST : UnigeneHs.149195 [ NCBI ]
CGAP (NCI)Hs.149195
Alternative Splicing GalleryENSG00000142619
Gene ExpressionPADI3 [ NCBI-GEO ]   PADI3 [ EBI - ARRAY_EXPRESS ]   PADI3 [ SEEK ]   PADI3 [ MEM ]
Gene Expression Viewer (FireBrowse)PADI3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51702
GTEX Portal (Tissue expression)PADI3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULW8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULW8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULW8
Splice isoforms : SwissVarQ9ULW8
Catalytic activity : Enzyme3.5.3.15 [ Enzyme-Expasy ]   3.5.3.153.5.3.15 [ IntEnz-EBI ]   3.5.3.15 [ BRENDA ]   3.5.3.15 [ KEGG ]   
PhosPhoSitePlusQ9ULW8
Domains : Interpro (EBI)Cupredoxin    PAD    PAD_C    PAD_N    Prot_Arg_deaminase_cen_dom   
Domain families : Pfam (Sanger)PAD (PF03068)    PAD_M (PF08527)    PAD_N (PF08526)   
Domain families : Pfam (NCBI)pfam03068    pfam08527    pfam08526   
Conserved Domain (NCBI)PADI3
DMDM Disease mutations51702
Blocks (Seattle)PADI3
SuperfamilyQ9ULW8
Human Protein AtlasENSG00000142619
Peptide AtlasQ9ULW8
HPRD08419
IPIIPI00008486   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULW8
IntAct (EBI)Q9ULW8
FunCoupENSG00000142619
BioGRIDPADI3
STRING (EMBL)PADI3
ZODIACPADI3
Ontologies - Pathways
QuickGOQ9ULW8
Ontology : AmiGOprotein-arginine deiminase activity  calcium ion binding  cytoplasm  protein citrullination  
Ontology : EGO-EBIprotein-arginine deiminase activity  calcium ion binding  cytoplasm  protein citrullination  
NDEx NetworkPADI3
Atlas of Cancer Signalling NetworkPADI3
Wikipedia pathwaysPADI3
Orthology - Evolution
OrthoDB51702
GeneTree (enSembl)ENSG00000142619
Phylogenetic Trees/Animal Genes : TreeFamPADI3
HOVERGENQ9ULW8
HOGENOMQ9ULW8
Homologs : HomoloGenePADI3
Homology/Alignments : Family Browser (UCSC)PADI3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPADI3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PADI3
dbVarPADI3
ClinVarPADI3
1000_GenomesPADI3 
Exome Variant ServerPADI3
ExAC (Exome Aggregation Consortium)PADI3 (select the gene name)
Genetic variants : HAPMAP51702
Genomic Variants (DGV)PADI3 [DGVbeta]
DECIPHER (Syndromes)1:17575593-17610727  ENSG00000142619
CONAN: Copy Number AnalysisPADI3 
Mutations
ICGC Data PortalPADI3 
TCGA Data PortalPADI3 
Broad Tumor PortalPADI3
OASIS PortalPADI3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPADI3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPADI3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PADI3
DgiDB (Drug Gene Interaction Database)PADI3
DoCM (Curated mutations)PADI3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PADI3 (select a term)
intoGenPADI3
Cancer3DPADI3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606755   
Orphanet
MedgenPADI3
Genetic Testing Registry PADI3
NextProtQ9ULW8 [Medical]
TSGene51702
GENETestsPADI3
Huge Navigator PADI3 [HugePedia]
snp3D : Map Gene to Disease51702
BioCentury BCIQPADI3
ClinGenPADI3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51702
Chemical/Pharm GKB GenePA32901
Clinical trialPADI3
Miscellaneous
canSAR (ICR)PADI3 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePADI3
EVEXPADI3
GoPubMedPADI3
iHOPPADI3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:40 CET 2017

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