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PADI6 (peptidyl arginine deiminase 6)

Identity

Alias_namespeptidyl arginine deiminase, type VI
Other aliasPREMBL2
hPADVI
HGNC (Hugo) PADI6
LocusID (NCBI) 353238
Atlas_Id 71628
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 17372196 and ends at 17401699 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PADI6   20449
Cards
Entrez_Gene (NCBI)PADI6  353238  peptidyl arginine deiminase 6
AliasesPREMBL2; hPADVI
GeneCards (Weizmann)PADI6
Ensembl hg19 (Hinxton)ENSG00000276747 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000276747 [Gene_View]  chr1:17372196-17401699 [Contig_View]  PADI6 [Vega]
ICGC DataPortalENSG00000276747
TCGA cBioPortalPADI6
AceView (NCBI)PADI6
Genatlas (Paris)PADI6
WikiGenes353238
SOURCE (Princeton)PADI6
Genetics Home Reference (NIH)PADI6
Genomic and cartography
GoldenPath hg38 (UCSC)PADI6  -     chr1:17372196-17401699 +  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PADI6  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblPADI6 - 1p36.13 [CytoView hg19]  PADI6 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBIPADI6 [Mapview hg19]  PADI6 [Mapview hg38]
OMIM610363   617234   
Gene and transcription
Genbank (Entrez)AY422079 AY443100 BC148641 BC153197
RefSeq transcript (Entrez)NM_207421
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PADI6
Cluster EST : UnigeneHs.531598 [ NCBI ]
CGAP (NCI)Hs.531598
Alternative Splicing GalleryENSG00000276747
Gene ExpressionPADI6 [ NCBI-GEO ]   PADI6 [ EBI - ARRAY_EXPRESS ]   PADI6 [ SEEK ]   PADI6 [ MEM ]
Gene Expression Viewer (FireBrowse)PADI6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353238
GTEX Portal (Tissue expression)PADI6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6TGC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6TGC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6TGC4
Splice isoforms : SwissVarQ6TGC4
Catalytic activity : Enzyme3.5.3.15 [ Enzyme-Expasy ]   3.5.3.153.5.3.15 [ IntEnz-EBI ]   3.5.3.15 [ BRENDA ]   3.5.3.15 [ KEGG ]   
PhosPhoSitePlusQ6TGC4
Domains : Interpro (EBI)Cupredoxin    PAD    PAD_C    PAD_N    Prot_Arg_deaminase_cen_dom   
Domain families : Pfam (Sanger)PAD (PF03068)    PAD_M (PF08527)    PAD_N (PF08526)   
Domain families : Pfam (NCBI)pfam03068    pfam08527    pfam08526   
Conserved Domain (NCBI)PADI6
DMDM Disease mutations353238
Blocks (Seattle)PADI6
PDB (SRS)4DAT    4DAU   
PDB (PDBSum)4DAT    4DAU   
PDB (IMB)4DAT    4DAU   
PDB (RSDB)4DAT    4DAU   
Structural Biology KnowledgeBase4DAT    4DAU   
SCOP (Structural Classification of Proteins)4DAT    4DAU   
CATH (Classification of proteins structures)4DAT    4DAU   
SuperfamilyQ6TGC4
Human Protein AtlasENSG00000276747
Peptide AtlasQ6TGC4
HPRD15095
IPIIPI00410495   
Protein Interaction databases
DIP (DOE-UCLA)Q6TGC4
IntAct (EBI)Q6TGC4
FunCoupENSG00000276747
BioGRIDPADI6
STRING (EMBL)PADI6
ZODIACPADI6
Ontologies - Pathways
QuickGOQ6TGC4
Ontology : AmiGOprotein-arginine deiminase activity  calcium ion binding  nucleus  cytoplasm  cytoplasm  cytoskeleton organization  cytoplasm organization  histone citrullination  regulation of translation by machinery localization  intermediate filament cytoskeleton  
Ontology : EGO-EBIprotein-arginine deiminase activity  calcium ion binding  nucleus  cytoplasm  cytoplasm  cytoskeleton organization  cytoplasm organization  histone citrullination  regulation of translation by machinery localization  intermediate filament cytoskeleton  
NDEx NetworkPADI6
Atlas of Cancer Signalling NetworkPADI6
Wikipedia pathwaysPADI6
Orthology - Evolution
OrthoDB353238
GeneTree (enSembl)ENSG00000276747
Phylogenetic Trees/Animal Genes : TreeFamPADI6
HOVERGENQ6TGC4
HOGENOMQ6TGC4
Homologs : HomoloGenePADI6
Homology/Alignments : Family Browser (UCSC)PADI6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPADI6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PADI6
dbVarPADI6
ClinVarPADI6
1000_GenomesPADI6 
Exome Variant ServerPADI6
ExAC (Exome Aggregation Consortium)PADI6 (select the gene name)
Genetic variants : HAPMAP353238
Genomic Variants (DGV)PADI6 [DGVbeta]
DECIPHERPADI6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPADI6 
Mutations
ICGC Data PortalPADI6 
TCGA Data PortalPADI6 
Broad Tumor PortalPADI6
OASIS PortalPADI6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPADI6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPADI6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PADI6
DgiDB (Drug Gene Interaction Database)PADI6
DoCM (Curated mutations)PADI6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PADI6 (select a term)
intoGenPADI6
Cancer3DPADI6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610363    617234   
Orphanet
MedgenPADI6
Genetic Testing Registry PADI6
NextProtQ6TGC4 [Medical]
TSGene353238
GENETestsPADI6
Huge Navigator PADI6 [HugePedia]
snp3D : Map Gene to Disease353238
BioCentury BCIQPADI6
ClinGenPADI6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353238
Chemical/Pharm GKB GenePA134975206
Clinical trialPADI6
Miscellaneous
canSAR (ICR)PADI6 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePADI6
EVEXPADI6
GoPubMedPADI6
iHOPPADI6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:47:40 CEST 2017

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