Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PAGR1 (PAXIP1 associated glutamate rich protein 1)

Identity

Alias_namesC16orf53
chromosome 16 open reading frame 53
PAXIP1 associated glutamate-rich protein 1
Alias_symbol (synonym)MGC4606
GAS
PA1
Other alias
HGNC (Hugo) PAGR1
LocusID (NCBI) 79447
Atlas_Id 53691
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29827528 and ends at 29833816 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PAGR1 (16p11.2) / CDH1 (16q22.1)PAGR1 (16p11.2) / MVP (16p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PAGR1   28707
Cards
Entrez_Gene (NCBI)PAGR1  79447  PAXIP1 associated glutamate rich protein 1
AliasesC16orf53; GAS; PA1
GeneCards (Weizmann)PAGR1
Ensembl hg19 (Hinxton)ENSG00000280789 [Gene_View]  chr16:29827528-29833816 [Contig_View]  PAGR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000280789 [Gene_View]  chr16:29827528-29833816 [Contig_View]  PAGR1 [Vega]
ICGC DataPortalENSG00000280789
TCGA cBioPortalPAGR1
AceView (NCBI)PAGR1
Genatlas (Paris)PAGR1
WikiGenes79447
SOURCE (Princeton)PAGR1
Genetics Home Reference (NIH)PAGR1
Genomic and cartography
GoldenPath hg19 (UCSC)PAGR1  -     chr16:29827528-29833816 +  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PAGR1  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblPAGR1 - 16p11.2 [CytoView hg19]  PAGR1 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIPAGR1 [Mapview hg19]  PAGR1 [Mapview hg38]
OMIM612033   
Gene and transcription
Genbank (Entrez)AK026112 AL549915 BC003640 CA455544 EF195235
RefSeq transcript (Entrez)NM_024516
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)PAGR1
Cluster EST : UnigeneHs.702841 [ NCBI ]
CGAP (NCI)Hs.702841
Alternative Splicing GalleryENSG00000280789
Gene ExpressionPAGR1 [ NCBI-GEO ]   PAGR1 [ EBI - ARRAY_EXPRESS ]   PAGR1 [ SEEK ]   PAGR1 [ MEM ]
Gene Expression Viewer (FireBrowse)PAGR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79447
GTEX Portal (Tissue expression)PAGR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTK6
Splice isoforms : SwissVarQ9BTK6
PhosPhoSitePlusQ9BTK6
Domains : Interpro (EBI)PA1   
Domain families : Pfam (Sanger)PAXIP1_C (PF15364)   
Domain families : Pfam (NCBI)pfam15364   
Conserved Domain (NCBI)PAGR1
DMDM Disease mutations79447
Blocks (Seattle)PAGR1
SuperfamilyQ9BTK6
Human Protein AtlasENSG00000280789
Peptide AtlasQ9BTK6
HPRD14647
IPIIPI00001600   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTK6
IntAct (EBI)Q9BTK6
FunCoupENSG00000280789
BioGRIDPAGR1
STRING (EMBL)PAGR1
ZODIACPAGR1
Ontologies - Pathways
QuickGOQ9BTK6
Ontology : AmiGOprotein binding  nucleus  DNA repair  DNA recombination  transcription, DNA-templated  estrogen receptor binding  positive regulation of intracellular estrogen receptor signaling pathway  histone methyltransferase complex  MLL3/4 complex  positive regulation of transcription from RNA polymerase II promoter  positive regulation of cell cycle G1/S phase transition  
Ontology : EGO-EBIprotein binding  nucleus  DNA repair  DNA recombination  transcription, DNA-templated  estrogen receptor binding  positive regulation of intracellular estrogen receptor signaling pathway  histone methyltransferase complex  MLL3/4 complex  positive regulation of transcription from RNA polymerase II promoter  positive regulation of cell cycle G1/S phase transition  
NDEx NetworkPAGR1
Atlas of Cancer Signalling NetworkPAGR1
Wikipedia pathwaysPAGR1
Orthology - Evolution
OrthoDB79447
GeneTree (enSembl)ENSG00000280789
Phylogenetic Trees/Animal Genes : TreeFamPAGR1
HOVERGENQ9BTK6
HOGENOMQ9BTK6
Homologs : HomoloGenePAGR1
Homology/Alignments : Family Browser (UCSC)PAGR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAGR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAGR1
dbVarPAGR1
ClinVarPAGR1
1000_GenomesPAGR1 
Exome Variant ServerPAGR1
ExAC (Exome Aggregation Consortium)PAGR1 (select the gene name)
Genetic variants : HAPMAP79447
Genomic Variants (DGV)PAGR1 [DGVbeta]
DECIPHER (Syndromes)16:29827528-29833816  ENSG00000280789
CONAN: Copy Number AnalysisPAGR1 
Mutations
ICGC Data PortalPAGR1 
TCGA Data PortalPAGR1 
Broad Tumor PortalPAGR1
OASIS PortalPAGR1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPAGR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PAGR1
DgiDB (Drug Gene Interaction Database)PAGR1
DoCM (Curated mutations)PAGR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAGR1 (select a term)
intoGenPAGR1
Cancer3DPAGR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612033   
Orphanet
MedgenPAGR1
Genetic Testing Registry PAGR1
NextProtQ9BTK6 [Medical]
TSGene79447
GENETestsPAGR1
Huge Navigator PAGR1 [HugePedia]
snp3D : Map Gene to Disease79447
BioCentury BCIQPAGR1
ClinGenPAGR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79447
Chemical/Pharm GKB GenePA142672260
Clinical trialPAGR1
Miscellaneous
canSAR (ICR)PAGR1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAGR1
EVEXPAGR1
GoPubMedPAGR1
iHOPPAGR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:20:16 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.