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PAIP1 (poly(A) binding protein interacting protein 1)

Identity

Other alias-
HGNC (Hugo) PAIP1
LocusID (NCBI) 10605
Atlas_Id 71635
Location 5p12  [Link to chromosome band 5p12]
Location_base_pair Starts at 43526268 and ends at 43557093 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HSP90AA1 (14q32.31) / PAIP1 (5p12)KYNU (2q22.2) / PAIP1 (5p12)PAIP1 (5p12) / DAB2 (5p13.1)
PAIP1 (5p12) / HSP90AA1 (14q32.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PAIP1   16945
Cards
Entrez_Gene (NCBI)PAIP1  10605  poly(A) binding protein interacting protein 1
Aliases
GeneCards (Weizmann)PAIP1
Ensembl hg19 (Hinxton)ENSG00000172239 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172239 [Gene_View]  chr5:43526268-43557093 [Contig_View]  PAIP1 [Vega]
ICGC DataPortalENSG00000172239
TCGA cBioPortalPAIP1
AceView (NCBI)PAIP1
Genatlas (Paris)PAIP1
WikiGenes10605
SOURCE (Princeton)PAIP1
Genetics Home Reference (NIH)PAIP1
Genomic and cartography
GoldenPath hg38 (UCSC)PAIP1  -     chr5:43526268-43557093 -  5p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAIP1  -     5p12   [Description]    (hg19-Feb_2009)
EnsemblPAIP1 - 5p12 [CytoView hg19]  PAIP1 - 5p12 [CytoView hg38]
Mapping of homologs : NCBIPAIP1 [Mapview hg19]  PAIP1 [Mapview hg38]
OMIM605184   
Gene and transcription
Genbank (Entrez)AF013758 AK308270 AL136920 BC005295 BC015937
RefSeq transcript (Entrez)NM_006451 NM_182789 NM_183323
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PAIP1
Cluster EST : UnigeneHs.482038 [ NCBI ]
CGAP (NCI)Hs.482038
Alternative Splicing GalleryENSG00000172239
Gene ExpressionPAIP1 [ NCBI-GEO ]   PAIP1 [ EBI - ARRAY_EXPRESS ]   PAIP1 [ SEEK ]   PAIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)PAIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10605
GTEX Portal (Tissue expression)PAIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H074   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H074  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H074
Splice isoforms : SwissVarQ9H074
PhosPhoSitePlusQ9H074
Domains : Interpro (EBI)ARM-type_fold    Ataxin-2_C    MIF4-like    MIF4G-like_typ-3   
Domain families : Pfam (Sanger)MIF4G (PF02854)    PAM2 (PF07145)   
Domain families : Pfam (NCBI)pfam02854    pfam07145   
Domain families : Smart (EMBL)MIF4G (SM00543)  
Conserved Domain (NCBI)PAIP1
DMDM Disease mutations10605
Blocks (Seattle)PAIP1
PDB (SRS)1JH4    3NTW    3RK6   
PDB (PDBSum)1JH4    3NTW    3RK6   
PDB (IMB)1JH4    3NTW    3RK6   
PDB (RSDB)1JH4    3NTW    3RK6   
Structural Biology KnowledgeBase1JH4    3NTW    3RK6   
SCOP (Structural Classification of Proteins)1JH4    3NTW    3RK6   
CATH (Classification of proteins structures)1JH4    3NTW    3RK6   
SuperfamilyQ9H074
Human Protein AtlasENSG00000172239
Peptide AtlasQ9H074
HPRD05539
IPIIPI00021466   IPI00337775   IPI00386299   IPI00967955   IPI00968225   IPI00966230   IPI00964644   IPI00964957   IPI00967740   IPI00966509   
Protein Interaction databases
DIP (DOE-UCLA)Q9H074
IntAct (EBI)Q9H074
FunCoupENSG00000172239
BioGRIDPAIP1
STRING (EMBL)PAIP1
ZODIACPAIP1
Ontologies - Pathways
QuickGOQ9H074
Ontology : AmiGOnuclear-transcribed mRNA poly(A) tail shortening  RNA binding  protein binding  cytoplasm  cytosol  translational initiation  translation activator activity  positive regulation of translation  mRNA stabilization  
Ontology : EGO-EBInuclear-transcribed mRNA poly(A) tail shortening  RNA binding  protein binding  cytoplasm  cytosol  translational initiation  translation activator activity  positive regulation of translation  mRNA stabilization  
Pathways : KEGGRNA transport   
NDEx NetworkPAIP1
Atlas of Cancer Signalling NetworkPAIP1
Wikipedia pathwaysPAIP1
Orthology - Evolution
OrthoDB10605
GeneTree (enSembl)ENSG00000172239
Phylogenetic Trees/Animal Genes : TreeFamPAIP1
HOVERGENQ9H074
HOGENOMQ9H074
Homologs : HomoloGenePAIP1
Homology/Alignments : Family Browser (UCSC)PAIP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAIP1
dbVarPAIP1
ClinVarPAIP1
1000_GenomesPAIP1 
Exome Variant ServerPAIP1
ExAC (Exome Aggregation Consortium)PAIP1 (select the gene name)
Genetic variants : HAPMAP10605
Genomic Variants (DGV)PAIP1 [DGVbeta]
DECIPHERPAIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPAIP1 
Mutations
ICGC Data PortalPAIP1 
TCGA Data PortalPAIP1 
Broad Tumor PortalPAIP1
OASIS PortalPAIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPAIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PAIP1
DgiDB (Drug Gene Interaction Database)PAIP1
DoCM (Curated mutations)PAIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAIP1 (select a term)
intoGenPAIP1
Cancer3DPAIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605184   
Orphanet
MedgenPAIP1
Genetic Testing Registry PAIP1
NextProtQ9H074 [Medical]
TSGene10605
GENETestsPAIP1
Target ValidationPAIP1
Huge Navigator PAIP1 [HugePedia]
snp3D : Map Gene to Disease10605
BioCentury BCIQPAIP1
ClinGenPAIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10605
Chemical/Pharm GKB GenePA134941557
Clinical trialPAIP1
Miscellaneous
canSAR (ICR)PAIP1 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAIP1
EVEXPAIP1
GoPubMedPAIP1
iHOPPAIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:26 CEST 2017

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