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PAIP2 (poly(A) binding protein interacting protein 2)

Identity

Alias (NCBI)PAIP-2
PAIP2A
HGNC (Hugo) PAIP2
HGNC Alias symbPAIP2A
LocusID (NCBI) 51247
Atlas_Id 71636
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 139341854 and ends at 139369717 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AFF1 (4q21.3) / PAIP2 (5q31.2)IDS (Xq28) / PAIP2 (5q31.2)MATR3 (5q31.2) / PAIP2 (5q31.2)
PAIP2 (5q31.2) / CCR6 (6q27)PAIP2 (5q31.2) / CDC25C (5q31.2)PAIP2 (5q31.2) / PAIP2 (5q31.2)
UBE2D2 (5q31.2) / PAIP2 (5q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PAIP2   17970
Cards
Entrez_Gene (NCBI)PAIP2    poly(A) binding protein interacting protein 2
AliasesPAIP-2; PAIP2A
GeneCards (Weizmann)PAIP2
Ensembl hg19 (Hinxton)ENSG00000120727 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120727 [Gene_View]  ENSG00000120727 [Sequence]  chr5:139341854-139369717 [Contig_View]  PAIP2 [Vega]
ICGC DataPortalENSG00000120727
TCGA cBioPortalPAIP2
AceView (NCBI)PAIP2
Genatlas (Paris)PAIP2
SOURCE (Princeton)PAIP2
Genetics Home Reference (NIH)PAIP2
Genomic and cartography
GoldenPath hg38 (UCSC)PAIP2  -     chr5:139341854-139369717 +  5q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAIP2  -     5q31.2   [Description]    (hg19-Feb_2009)
GoldenPathPAIP2 - 5q31.2 [CytoView hg19]  PAIP2 - 5q31.2 [CytoView hg38]
ImmunoBaseENSG00000120727
Genome Data Viewer NCBIPAIP2 [Mapview hg19]  
OMIM605604   
Gene and transcription
Genbank (Entrez)AF151052 AF317675 AK024552 AK314672 AL136640
RefSeq transcript (Entrez)NM_001033112 NM_016480
Consensus coding sequences : CCDS (NCBI)PAIP2
Gene ExpressionPAIP2 [ NCBI-GEO ]   PAIP2 [ EBI - ARRAY_EXPRESS ]   PAIP2 [ SEEK ]   PAIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)PAIP2 [ Firebrowse - Broad ]
GenevisibleExpression of PAIP2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51247
GTEX Portal (Tissue expression)PAIP2
Human Protein AtlasENSG00000120727-PAIP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BPZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BPZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BPZ3
PhosPhoSitePlusQ9BPZ3
Domains : Interpro (EBI)Ataxin-2_C    PAIP2-like   
Domain families : Pfam (Sanger)PAM2 (PF07145)   
Domain families : Pfam (NCBI)pfam07145   
Conserved Domain (NCBI)PAIP2
PDB (RSDB)1JGN    3KUS    3KUT   
PDB Europe1JGN    3KUS    3KUT   
PDB (PDBSum)1JGN    3KUS    3KUT   
PDB (IMB)1JGN    3KUS    3KUT   
Structural Biology KnowledgeBase1JGN    3KUS    3KUT   
SCOP (Structural Classification of Proteins)1JGN    3KUS    3KUT   
CATH (Classification of proteins structures)1JGN    3KUS    3KUT   
SuperfamilyQ9BPZ3
AlphaFold pdb e-kbQ9BPZ3   
Human Protein Atlas [tissue]ENSG00000120727-PAIP2 [tissue]
HPRD05726
Protein Interaction databases
DIP (DOE-UCLA)Q9BPZ3
IntAct (EBI)Q9BPZ3
BioGRIDPAIP2
STRING (EMBL)PAIP2
ZODIACPAIP2
Ontologies - Pathways
QuickGOQ9BPZ3
Ontology : AmiGOtranslation repressor activity, mRNA regulatory element binding  mRNA binding  protein binding  cytoplasm  cytoplasm  spermatogenesis  memory  negative regulation of translation  translation repressor activity  translation repressor activity  negative regulation of translational initiation  regulation of long-term synaptic potentiation  
Ontology : EGO-EBItranslation repressor activity, mRNA regulatory element binding  mRNA binding  protein binding  cytoplasm  cytoplasm  spermatogenesis  memory  negative regulation of translation  translation repressor activity  translation repressor activity  negative regulation of translational initiation  regulation of long-term synaptic potentiation  
NDEx NetworkPAIP2
Atlas of Cancer Signalling NetworkPAIP2
Wikipedia pathwaysPAIP2
Orthology - Evolution
OrthoDB51247
GeneTree (enSembl)ENSG00000120727
Phylogenetic Trees/Animal Genes : TreeFamPAIP2
Homologs : HomoloGenePAIP2
Homology/Alignments : Family Browser (UCSC)PAIP2
Gene fusions - Rearrangements
Fusion : QuiverPAIP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAIP2
dbVarPAIP2
ClinVarPAIP2
MonarchPAIP2
1000_GenomesPAIP2 
Exome Variant ServerPAIP2
GNOMAD BrowserENSG00000120727
Varsome BrowserPAIP2
ACMGPAIP2 variants
VarityQ9BPZ3
Genomic Variants (DGV)PAIP2 [DGVbeta]
DECIPHERPAIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPAIP2 
Mutations
ICGC Data PortalPAIP2 
TCGA Data PortalPAIP2 
Broad Tumor PortalPAIP2
OASIS PortalPAIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPAIP2
Mutations and Diseases : HGMDPAIP2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPAIP2
DgiDB (Drug Gene Interaction Database)PAIP2
DoCM (Curated mutations)PAIP2
CIViC (Clinical Interpretations of Variants in Cancer)PAIP2
Cancer3DPAIP2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605604   
Orphanet
DisGeNETPAIP2
MedgenPAIP2
Genetic Testing Registry PAIP2
NextProtQ9BPZ3 [Medical]
GENETestsPAIP2
Target ValidationPAIP2
Huge Navigator PAIP2 [HugePedia]
ClinGenPAIP2
Clinical trials, drugs, therapy
MyCancerGenomePAIP2
Protein Interactions : CTDPAIP2
Pharm GKB GenePA134897284
PharosQ9BPZ3
Clinical trialPAIP2
Miscellaneous
canSAR (ICR)PAIP2
HarmonizomePAIP2
DataMed IndexPAIP2
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPAIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:15:22 CEST 2021

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