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PAIP2 (poly(A) binding protein interacting protein 2)

Identity

Alias_symbol (synonym)PAIP2A
Other aliasPAIP-2
HGNC (Hugo) PAIP2
LocusID (NCBI) 51247
Atlas_Id 71636
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 139342434 and ends at 139369720 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AFF1 (4q21.3) / PAIP2 (5q31.2)IDS (Xq28) / PAIP2 (5q31.2)MATR3 (5q31.2) / PAIP2 (5q31.2)
PAIP2 (5q31.2) / CCR6 (6q27)PAIP2 (5q31.2) / CDC25C (5q31.2)PAIP2 (5q31.2) / PAIP2 (5q31.2)
UBE2D2 (5q31.2) / PAIP2 (5q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PAIP2   17970
Cards
Entrez_Gene (NCBI)PAIP2  51247  poly(A) binding protein interacting protein 2
AliasesPAIP-2; PAIP2A
GeneCards (Weizmann)PAIP2
Ensembl hg19 (Hinxton)ENSG00000120727 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120727 [Gene_View]  chr5:139342434-139369720 [Contig_View]  PAIP2 [Vega]
ICGC DataPortalENSG00000120727
TCGA cBioPortalPAIP2
AceView (NCBI)PAIP2
Genatlas (Paris)PAIP2
WikiGenes51247
SOURCE (Princeton)PAIP2
Genetics Home Reference (NIH)PAIP2
Genomic and cartography
GoldenPath hg38 (UCSC)PAIP2  -     chr5:139342434-139369720 +  5q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAIP2  -     5q31.2   [Description]    (hg19-Feb_2009)
EnsemblPAIP2 - 5q31.2 [CytoView hg19]  PAIP2 - 5q31.2 [CytoView hg38]
Mapping of homologs : NCBIPAIP2 [Mapview hg19]  PAIP2 [Mapview hg38]
OMIM605604   
Gene and transcription
Genbank (Entrez)AF151052 AF317675 AK024552 AK314672 AL136640
RefSeq transcript (Entrez)NM_001033112 NM_016480
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PAIP2
Cluster EST : UnigeneHs.396644 [ NCBI ]
CGAP (NCI)Hs.396644
Alternative Splicing GalleryENSG00000120727
Gene ExpressionPAIP2 [ NCBI-GEO ]   PAIP2 [ EBI - ARRAY_EXPRESS ]   PAIP2 [ SEEK ]   PAIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)PAIP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51247
GTEX Portal (Tissue expression)PAIP2
Human Protein AtlasENSG00000120727-PAIP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BPZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BPZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BPZ3
Splice isoforms : SwissVarQ9BPZ3
PhosPhoSitePlusQ9BPZ3
Domains : Interpro (EBI)Ataxin-2_C   
Domain families : Pfam (Sanger)PAM2 (PF07145)   
Domain families : Pfam (NCBI)pfam07145   
Conserved Domain (NCBI)PAIP2
DMDM Disease mutations51247
Blocks (Seattle)PAIP2
PDB (SRS)1JGN    3KUS    3KUT   
PDB (PDBSum)1JGN    3KUS    3KUT   
PDB (IMB)1JGN    3KUS    3KUT   
PDB (RSDB)1JGN    3KUS    3KUT   
Structural Biology KnowledgeBase1JGN    3KUS    3KUT   
SCOP (Structural Classification of Proteins)1JGN    3KUS    3KUT   
CATH (Classification of proteins structures)1JGN    3KUS    3KUT   
SuperfamilyQ9BPZ3
Human Protein Atlas [tissue]ENSG00000120727-PAIP2 [tissue]
Peptide AtlasQ9BPZ3
HPRD05726
IPIIPI00304483   IPI00966235   IPI00967201   
Protein Interaction databases
DIP (DOE-UCLA)Q9BPZ3
IntAct (EBI)Q9BPZ3
FunCoupENSG00000120727
BioGRIDPAIP2
STRING (EMBL)PAIP2
ZODIACPAIP2
Ontologies - Pathways
QuickGOQ9BPZ3
Ontology : AmiGOmRNA binding  protein binding  cytoplasm  spermatogenesis  memory  translation repressor activity  negative regulation of translational initiation  regulation of long-term synaptic potentiation  
Ontology : EGO-EBImRNA binding  protein binding  cytoplasm  spermatogenesis  memory  translation repressor activity  negative regulation of translational initiation  regulation of long-term synaptic potentiation  
NDEx NetworkPAIP2
Atlas of Cancer Signalling NetworkPAIP2
Wikipedia pathwaysPAIP2
Orthology - Evolution
OrthoDB51247
GeneTree (enSembl)ENSG00000120727
Phylogenetic Trees/Animal Genes : TreeFamPAIP2
HOVERGENQ9BPZ3
HOGENOMQ9BPZ3
Homologs : HomoloGenePAIP2
Homology/Alignments : Family Browser (UCSC)PAIP2
Gene fusions - Rearrangements
Fusion: Tumor Portal PAIP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAIP2
dbVarPAIP2
ClinVarPAIP2
1000_GenomesPAIP2 
Exome Variant ServerPAIP2
ExAC (Exome Aggregation Consortium)ENSG00000120727
GNOMAD BrowserENSG00000120727
Genetic variants : HAPMAP51247
Genomic Variants (DGV)PAIP2 [DGVbeta]
DECIPHERPAIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPAIP2 
Mutations
ICGC Data PortalPAIP2 
TCGA Data PortalPAIP2 
Broad Tumor PortalPAIP2
OASIS PortalPAIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPAIP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PAIP2
DgiDB (Drug Gene Interaction Database)PAIP2
DoCM (Curated mutations)PAIP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAIP2 (select a term)
intoGenPAIP2
Cancer3DPAIP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605604   
Orphanet
MedgenPAIP2
Genetic Testing Registry PAIP2
NextProtQ9BPZ3 [Medical]
TSGene51247
GENETestsPAIP2
Target ValidationPAIP2
Huge Navigator PAIP2 [HugePedia]
snp3D : Map Gene to Disease51247
BioCentury BCIQPAIP2
ClinGenPAIP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51247
Chemical/Pharm GKB GenePA134897284
Clinical trialPAIP2
Miscellaneous
canSAR (ICR)PAIP2 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAIP2
EVEXPAIP2
GoPubMedPAIP2
iHOPPAIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:21:39 CET 2017

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