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PAIP2B (poly(A) binding protein interacting protein 2B)

Identity

Other alias-
HGNC (Hugo) PAIP2B
LocusID (NCBI) 400961
Atlas_Id 57222
Location 2p13.3  [Link to chromosome band 2p13]
Location_base_pair Starts at 71182739 and ends at 71227083 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KIF21A (12q12) / PAIP2B (2p13.3)PAIP2B (2p13.3) / YEATS2 (3q27.1)VPS36 (13q14.3) / PAIP2B (2p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PAIP2B   29200
Cards
Entrez_Gene (NCBI)PAIP2B  400961  poly(A) binding protein interacting protein 2B
Aliases
GeneCards (Weizmann)PAIP2B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:71182739-71227083 [Contig_View]  PAIP2B [Vega]
TCGA cBioPortalPAIP2B
AceView (NCBI)PAIP2B
Genatlas (Paris)PAIP2B
WikiGenes400961
SOURCE (Princeton)PAIP2B
Genetics Home Reference (NIH)PAIP2B
Genomic and cartography
GoldenPath hg38 (UCSC)PAIP2B  -     chr2:71182739-71227083 -  2p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAIP2B  -     2p13.3   [Description]    (hg19-Feb_2009)
EnsemblPAIP2B - 2p13.3 [CytoView hg19]  PAIP2B - 2p13.3 [CytoView hg38]
Mapping of homologs : NCBIPAIP2B [Mapview hg19]  PAIP2B [Mapview hg38]
OMIM611018   
Gene and transcription
Genbank (Entrez)AB032981 AL110211 BC156857 DA247526 DA346299
RefSeq transcript (Entrez)NM_020459
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PAIP2B
Cluster EST : UnigeneHs.416735 [ NCBI ]
CGAP (NCI)Hs.416735
Gene ExpressionPAIP2B [ NCBI-GEO ]   PAIP2B [ EBI - ARRAY_EXPRESS ]   PAIP2B [ SEEK ]   PAIP2B [ MEM ]
Gene Expression Viewer (FireBrowse)PAIP2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400961
GTEX Portal (Tissue expression)PAIP2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULR5
Splice isoforms : SwissVarQ9ULR5
PhosPhoSitePlusQ9ULR5
Domains : Interpro (EBI)Ataxin-2_C   
Domain families : Pfam (Sanger)PAM2 (PF07145)   
Domain families : Pfam (NCBI)pfam07145   
Conserved Domain (NCBI)PAIP2B
DMDM Disease mutations400961
Blocks (Seattle)PAIP2B
SuperfamilyQ9ULR5
Peptide AtlasQ9ULR5
IPIIPI00008334   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULR5
IntAct (EBI)Q9ULR5
BioGRIDPAIP2B
STRING (EMBL)PAIP2B
ZODIACPAIP2B
Ontologies - Pathways
QuickGOQ9ULR5
Ontology : AmiGOtranslation repressor activity, nucleic acid binding  protein binding  cytoplasm  negative regulation of translational initiation  
Ontology : EGO-EBItranslation repressor activity, nucleic acid binding  protein binding  cytoplasm  negative regulation of translational initiation  
NDEx NetworkPAIP2B
Atlas of Cancer Signalling NetworkPAIP2B
Wikipedia pathwaysPAIP2B
Orthology - Evolution
OrthoDB400961
Phylogenetic Trees/Animal Genes : TreeFamPAIP2B
HOVERGENQ9ULR5
HOGENOMQ9ULR5
Homologs : HomoloGenePAIP2B
Homology/Alignments : Family Browser (UCSC)PAIP2B
Gene fusions - Rearrangements
Tumor Fusion PortalPAIP2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAIP2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAIP2B
dbVarPAIP2B
ClinVarPAIP2B
1000_GenomesPAIP2B 
Exome Variant ServerPAIP2B
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP400961
Genomic Variants (DGV)PAIP2B [DGVbeta]
DECIPHERPAIP2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPAIP2B 
Mutations
ICGC Data PortalPAIP2B 
TCGA Data PortalPAIP2B 
Broad Tumor PortalPAIP2B
OASIS PortalPAIP2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAIP2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPAIP2B
BioMutasearch PAIP2B
DgiDB (Drug Gene Interaction Database)PAIP2B
DoCM (Curated mutations)PAIP2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAIP2B (select a term)
intoGenPAIP2B
Cancer3DPAIP2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611018   
Orphanet
DisGeNETPAIP2B
MedgenPAIP2B
Genetic Testing Registry PAIP2B
NextProtQ9ULR5 [Medical]
TSGene400961
GENETestsPAIP2B
Target ValidationPAIP2B
Huge Navigator PAIP2B [HugePedia]
snp3D : Map Gene to Disease400961
BioCentury BCIQPAIP2B
ClinGenPAIP2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400961
Chemical/Pharm GKB GenePA162398595
Clinical trialPAIP2B
Miscellaneous
canSAR (ICR)PAIP2B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAIP2B
EVEXPAIP2B
GoPubMedPAIP2B
iHOPPAIP2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:51:10 CET 2017

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