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PALD1 (phosphatase domain containing, paladin 1)

Identity

Alias_namesPALD
KIAA1274
paladin
KIAA1274
Other alias
HGNC (Hugo) PALD1
LocusID (NCBI) 27143
Atlas_Id 71638
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 70478808 and ends at 70568450 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PALD1   23530
Cards
Entrez_Gene (NCBI)PALD1  27143  phosphatase domain containing, paladin 1
AliasesKIAA1274; PALD
GeneCards (Weizmann)PALD1
Ensembl hg19 (Hinxton)ENSG00000107719 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107719 [Gene_View]  chr10:70478808-70568450 [Contig_View]  PALD1 [Vega]
ICGC DataPortalENSG00000107719
TCGA cBioPortalPALD1
AceView (NCBI)PALD1
Genatlas (Paris)PALD1
WikiGenes27143
SOURCE (Princeton)PALD1
Genetics Home Reference (NIH)PALD1
Genomic and cartography
GoldenPath hg38 (UCSC)PALD1  -     chr10:70478808-70568450 +  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PALD1  -     10q22.1   [Description]    (hg19-Feb_2009)
EnsemblPALD1 - 10q22.1 [CytoView hg19]  PALD1 - 10q22.1 [CytoView hg38]
Mapping of homologs : NCBIPALD1 [Mapview hg19]  PALD1 [Mapview hg38]
OMIM614656   
Gene and transcription
Genbank (Entrez)AB033100 AK021806 BC015004 BC040163 BC048195
RefSeq transcript (Entrez)NM_014431
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PALD1
Cluster EST : UnigeneHs.202351 [ NCBI ]
CGAP (NCI)Hs.202351
Alternative Splicing GalleryENSG00000107719
Gene ExpressionPALD1 [ NCBI-GEO ]   PALD1 [ EBI - ARRAY_EXPRESS ]   PALD1 [ SEEK ]   PALD1 [ MEM ]
Gene Expression Viewer (FireBrowse)PALD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27143
GTEX Portal (Tissue expression)PALD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULE6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULE6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULE6
Splice isoforms : SwissVarQ9ULE6
PhosPhoSitePlusQ9ULE6
Domains : Interpro (EBI)Prot-tyrosine_phosphatase-like    Tyr_Pase_cat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PTPc_motif (SM00404)  
Conserved Domain (NCBI)PALD1
DMDM Disease mutations27143
Blocks (Seattle)PALD1
SuperfamilyQ9ULE6
Human Protein AtlasENSG00000107719
Peptide AtlasQ9ULE6
HPRD11419
IPIIPI00297212   IPI00937450   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULE6
IntAct (EBI)Q9ULE6
FunCoupENSG00000107719
BioGRIDPALD1
STRING (EMBL)PALD1
ZODIACPALD1
Ontologies - Pathways
QuickGOQ9ULE6
Ontology : AmiGOprotein serine/threonine phosphatase activity  protein tyrosine phosphatase activity  protein binding  nucleus  cytosol  protein tyrosine/serine/threonine phosphatase activity  peptidyl-tyrosine dephosphorylation  
Ontology : EGO-EBIprotein serine/threonine phosphatase activity  protein tyrosine phosphatase activity  protein binding  nucleus  cytosol  protein tyrosine/serine/threonine phosphatase activity  peptidyl-tyrosine dephosphorylation  
NDEx NetworkPALD1
Atlas of Cancer Signalling NetworkPALD1
Wikipedia pathwaysPALD1
Orthology - Evolution
OrthoDB27143
GeneTree (enSembl)ENSG00000107719
Phylogenetic Trees/Animal Genes : TreeFamPALD1
HOVERGENQ9ULE6
HOGENOMQ9ULE6
Homologs : HomoloGenePALD1
Homology/Alignments : Family Browser (UCSC)PALD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPALD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PALD1
dbVarPALD1
ClinVarPALD1
1000_GenomesPALD1 
Exome Variant ServerPALD1
ExAC (Exome Aggregation Consortium)PALD1 (select the gene name)
Genetic variants : HAPMAP27143
Genomic Variants (DGV)PALD1 [DGVbeta]
DECIPHERPALD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPALD1 
Mutations
ICGC Data PortalPALD1 
TCGA Data PortalPALD1 
Broad Tumor PortalPALD1
OASIS PortalPALD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPALD1
BioMutasearch PALD1
DgiDB (Drug Gene Interaction Database)PALD1
DoCM (Curated mutations)PALD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PALD1 (select a term)
intoGenPALD1
Cancer3DPALD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614656   
Orphanet
MedgenPALD1
Genetic Testing Registry PALD1
NextProtQ9ULE6 [Medical]
TSGene27143
GENETestsPALD1
Target ValidationPALD1
Huge Navigator PALD1 [HugePedia]
snp3D : Map Gene to Disease27143
BioCentury BCIQPALD1
ClinGenPALD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27143
Chemical/Pharm GKB GenePA134986569
Clinical trialPALD1
Miscellaneous
canSAR (ICR)PALD1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePALD1
EVEXPALD1
GoPubMedPALD1
iHOPPALD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:54 CEST 2017

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