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PALLD (palladin, cytoskeletal associated protein)

Identity

Other namesCGI151
MYN
PNCA1
SIH002
HGNC (Hugo) PALLD
LocusID (NCBI) 23022
Location 4q32.3
Location_base_pair Starts at 169418217 and ends at 169849608 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PALLD   17068
Cards
Entrez_Gene (NCBI)PALLD  23022  palladin, cytoskeletal associated protein
GeneCards (Weizmann)PALLD
Ensembl (Hinxton)ENSG00000129116 [Gene_View]  chr4:169418217-169849608 [Contig_View]  PALLD [Vega]
ICGC DataPortalENSG00000129116
cBioPortalPALLD
AceView (NCBI)PALLD
Genatlas (Paris)PALLD
WikiGenes23022
SOURCE (Princeton)NM_001166108 NM_001166109 NM_001166110 NM_016081
Genomic and cartography
GoldenPath (UCSC)PALLD  -  4q32.3   chr4:169418217-169849608 +  4q32.3   [Description]    (hg19-Feb_2009)
EnsemblPALLD - 4q32.3 [CytoView]
Mapping of homologs : NCBIPALLD [Mapview]
OMIM606856   608092   
Gene and transcription
Genbank (Entrez)AB023209 AF077041 AF151909 AF464873 AI418424
RefSeq transcript (Entrez)NM_001166108 NM_001166109 NM_001166110 NM_016081
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NG_013376 NT_016354 NW_001838921 NW_004929320
Consensus coding sequences : CCDS (NCBI)PALLD
Cluster EST : UnigeneHs.151220 [ NCBI ]
CGAP (NCI)Hs.151220
Alternative Splicing : Fast-db (Paris)GSHG0022971
Alternative Splicing GalleryENSG00000129116
Gene ExpressionPALLD [ NCBI-GEO ]     PALLD [ SEEK ]   PALLD [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WX93 (Uniprot)
NextProtQ8WX93  [Medical]
With graphics : InterProQ8WX93
Splice isoforms : SwissVarQ8WX93 (Swissvar)
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom [organisation]   Ig-like_fold [organisation]   Ig_I-set [organisation]   Ig_sub2 [organisation]  
Related proteins : CluSTrQ8WX93
Domain families : Pfam (Sanger)I-set (PF07679)   
Domain families : Pfam (NCBI)pfam07679   
Domain families : Smart (EMBL)IGc2 (SM00408)  
DMDM Disease mutations23022
Blocks (Seattle)Q8WX93
PDB (SRS)2DM2    2DM3   
PDB (PDBSum)2DM2    2DM3   
PDB (IMB)2DM2    2DM3   
PDB (RSDB)2DM2    2DM3   
Human Protein AtlasENSG00000129116 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ8WX93
HPRD09731
IPIIPI00856116   IPI00292009   IPI00855763   IPI00383645   IPI00856001   IPI00166197   IPI00856046   IPI00945423   IPI00945254   IPI00965940   IPI00964234   IPI00965154   IPI00964497   IPI00965469   IPI00873173   IPI00967286   
Protein Interaction databases
DIP (DOE-UCLA)Q8WX93
IntAct (EBI)Q8WX93
FunCoupENSG00000129116
BioGRIDPALLD
InParanoidQ8WX93
Interologous Interaction database Q8WX93
IntegromeDBPALLD
STRING (EMBL)PALLD
Ontologies - Pathways
Ontology : AmiGOruffle  actin binding  protein binding  nucleus  actin filament  focal adhesion  cytoskeleton organization  Z disc  lamellipodium  muscle alpha-actinin binding  
Ontology : EGO-EBIruffle  actin binding  protein binding  nucleus  actin filament  focal adhesion  cytoskeleton organization  Z disc  lamellipodium  muscle alpha-actinin binding  
Protein Interaction DatabasePALLD
Wikipedia pathwaysPALLD
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PALLD
snp3D : Map Gene to Disease23022
SNP (GeneSNP Utah)PALLD
SNP : HGBasePALLD
Genetic variants : HAPMAPPALLD
Exome VariantPALLD
1000_GenomesPALLD 
ICGC programENSG00000129116 
Somatic Mutations in Cancer : COSMICPALLD 
CONAN: Copy Number AnalysisPALLD 
Mutations and Diseases : HGMDPALLD
Genomic VariantsPALLD  PALLD [DGVbeta]
dbVarPALLD
ClinVarPALLD
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM606856    608092   
MedgenPALLD
GENETestsPALLD
Disease Genetic AssociationPALLD
Huge Navigator PALLD [HugePedia]  PALLD [HugeCancerGEM]
General knowledge
Homologs : HomoloGenePALLD
Homology/Alignments : Family Browser (UCSC)PALLD
Phylogenetic Trees/Animal Genes : TreeFamPALLD
Chemical/Protein Interactions : CTD23022
Chemical/Pharm GKB GenePA142671205
Clinical trialPALLD
Cancer Resource (Charite)ENSG00000129116
Other databases
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
CoreMinePALLD
iHOPPALLD
OncoSearchPALLD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:42:17 CEST 2014

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