Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PALM (paralemmin)

Identity

Alias_symbol (synonym)KIAA0270
Other alias-
HGNC (Hugo) PALM
LocusID (NCBI) 5064
Atlas_Id 71639
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 708953 and ends at 748330 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PIP5K1C (19p13.3) / PALM (19p13.3)POLRMT (19p13.3) / PALM (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PALM   8594
Cards
Entrez_Gene (NCBI)PALM  5064  paralemmin
Aliases
GeneCards (Weizmann)PALM
Ensembl hg19 (Hinxton)ENSG00000099864 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099864 [Gene_View]  chr19:708953-748330 [Contig_View]  PALM [Vega]
ICGC DataPortalENSG00000099864
TCGA cBioPortalPALM
AceView (NCBI)PALM
Genatlas (Paris)PALM
WikiGenes5064
SOURCE (Princeton)PALM
Genetics Home Reference (NIH)PALM
Genomic and cartography
GoldenPath hg38 (UCSC)PALM  -     chr19:708953-748330 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PALM  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblPALM - 19p13.3 [CytoView hg19]  PALM - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIPALM [Mapview hg19]  PALM [Mapview hg38]
OMIM608134   
Gene and transcription
Genbank (Entrez)AK022919 AK299809 AK301181 AK315168 BC019596
RefSeq transcript (Entrez)NM_001040134 NM_002579
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PALM
Cluster EST : UnigeneHs.631841 [ NCBI ]
CGAP (NCI)Hs.631841
Alternative Splicing GalleryENSG00000099864
Gene ExpressionPALM [ NCBI-GEO ]   PALM [ EBI - ARRAY_EXPRESS ]   PALM [ SEEK ]   PALM [ MEM ]
Gene Expression Viewer (FireBrowse)PALM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5064
GTEX Portal (Tissue expression)PALM
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75781   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75781  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75781
Splice isoforms : SwissVarO75781
PhosPhoSitePlusO75781
Domains : Interpro (EBI)Paralemmin   
Domain families : Pfam (Sanger)Paralemmin (PF03285)   
Domain families : Pfam (NCBI)pfam03285   
Conserved Domain (NCBI)PALM
DMDM Disease mutations5064
Blocks (Seattle)PALM
SuperfamilyO75781
Human Protein AtlasENSG00000099864
Peptide AtlasO75781
HPRD09734
IPIIPI00301023   IPI00220002   IPI01009692   
Protein Interaction databases
DIP (DOE-UCLA)O75781
IntAct (EBI)O75781
FunCoupENSG00000099864
BioGRIDPALM
STRING (EMBL)PALM
ZODIACPALM
Ontologies - Pathways
QuickGOO75781
Ontology : AmiGOprotein binding  nucleus  plasma membrane  integral component of plasma membrane  movement of cell or subcellular component  cytoskeleton organization  negative regulation of adenylate cyclase activity  regulation of cell shape  postsynaptic density  basolateral plasma membrane  apicolateral plasma membrane  axon  cytoplasmic vesicle  filopodium membrane  D3 dopamine receptor binding  dendritic spine membrane  dendritic spine  intracellular membrane-bounded organelle  positive regulation of filopodium assembly  synapse maturation  negative regulation of dopamine receptor signaling pathway  cellular response to electrical stimulus  protein targeting to plasma membrane  
Ontology : EGO-EBIprotein binding  nucleus  plasma membrane  integral component of plasma membrane  movement of cell or subcellular component  cytoskeleton organization  negative regulation of adenylate cyclase activity  regulation of cell shape  postsynaptic density  basolateral plasma membrane  apicolateral plasma membrane  axon  cytoplasmic vesicle  filopodium membrane  D3 dopamine receptor binding  dendritic spine membrane  dendritic spine  intracellular membrane-bounded organelle  positive regulation of filopodium assembly  synapse maturation  negative regulation of dopamine receptor signaling pathway  cellular response to electrical stimulus  protein targeting to plasma membrane  
NDEx NetworkPALM
Atlas of Cancer Signalling NetworkPALM
Wikipedia pathwaysPALM
Orthology - Evolution
OrthoDB5064
GeneTree (enSembl)ENSG00000099864
Phylogenetic Trees/Animal Genes : TreeFamPALM
HOVERGENO75781
HOGENOMO75781
Homologs : HomoloGenePALM
Homology/Alignments : Family Browser (UCSC)PALM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPALM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PALM
dbVarPALM
ClinVarPALM
1000_GenomesPALM 
Exome Variant ServerPALM
ExAC (Exome Aggregation Consortium)PALM (select the gene name)
Genetic variants : HAPMAP5064
Genomic Variants (DGV)PALM [DGVbeta]
DECIPHERPALM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPALM 
Mutations
ICGC Data PortalPALM 
TCGA Data PortalPALM 
Broad Tumor PortalPALM
OASIS PortalPALM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPALM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPALM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PALM
DgiDB (Drug Gene Interaction Database)PALM
DoCM (Curated mutations)PALM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PALM (select a term)
intoGenPALM
Cancer3DPALM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608134   
Orphanet
MedgenPALM
Genetic Testing Registry PALM
NextProtO75781 [Medical]
TSGene5064
GENETestsPALM
Target ValidationPALM
Huge Navigator PALM [HugePedia]
snp3D : Map Gene to Disease5064
BioCentury BCIQPALM
ClinGenPALM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5064
Chemical/Pharm GKB GenePA32923
Clinical trialPALM
Miscellaneous
canSAR (ICR)PALM (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePALM
EVEXPALM
GoPubMedPALM
iHOPPALM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:35:27 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.