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PALM2 (paralemmin 2)

Identity

Other aliasAKAP2
HGNC (Hugo) PALM2
LocusID (NCBI) 114299
Atlas_Id 54524
Location 9q31.3  [Link to chromosome band 9q31]
Location_base_pair Starts at 109640788 and ends at 109951476 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KPNA4 (3q25.33) / PALM2 (9q31.3)PALM2 (9q31.3) / AKAP2 (9q31.3)PALM2 (9q31.3) / GNAQ (9q21.2)
PALM2 (9q31.3) / SOGA1 (20q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PALM2   15845
Cards
Entrez_Gene (NCBI)PALM2  114299  paralemmin 2
AliasesAKAP2
GeneCards (Weizmann)PALM2
Ensembl hg19 (Hinxton)ENSG00000243444 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243444 [Gene_View]  chr9:109640788-109951476 [Contig_View]  PALM2 [Vega]
ICGC DataPortalENSG00000243444
TCGA cBioPortalPALM2
AceView (NCBI)PALM2
Genatlas (Paris)PALM2
WikiGenes114299
SOURCE (Princeton)PALM2
Genetics Home Reference (NIH)PALM2
Genomic and cartography
GoldenPath hg38 (UCSC)PALM2  -     chr9:109640788-109951476 +  9q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PALM2  -     9q31.3   [Description]    (hg19-Feb_2009)
EnsemblPALM2 - 9q31.3 [CytoView hg19]  PALM2 - 9q31.3 [CytoView hg38]
Mapping of homologs : NCBIPALM2 [Mapview hg19]  PALM2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ312216 AK095003 BC039306 BQ187933
RefSeq transcript (Entrez)NM_001037293 NM_053016
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PALM2
Cluster EST : UnigeneHs.591908 [ NCBI ]
CGAP (NCI)Hs.591908
Alternative Splicing GalleryENSG00000243444
Gene ExpressionPALM2 [ NCBI-GEO ]   PALM2 [ EBI - ARRAY_EXPRESS ]   PALM2 [ SEEK ]   PALM2 [ MEM ]
Gene Expression Viewer (FireBrowse)PALM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114299
GTEX Portal (Tissue expression)PALM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXS6
Splice isoforms : SwissVarQ8IXS6
PhosPhoSitePlusQ8IXS6
Domains : Interpro (EBI)Paralemmin   
Domain families : Pfam (Sanger)Paralemmin (PF03285)   
Domain families : Pfam (NCBI)pfam03285   
Conserved Domain (NCBI)PALM2
DMDM Disease mutations114299
Blocks (Seattle)PALM2
SuperfamilyQ8IXS6
Human Protein AtlasENSG00000243444
Peptide AtlasQ8IXS6
HPRD17817
IPIIPI00384832   IPI00643947   IPI00945205   IPI00945031   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXS6
IntAct (EBI)Q8IXS6
FunCoupENSG00000243444
BioGRIDPALM2
STRING (EMBL)PALM2
ZODIACPALM2
Ontologies - Pathways
QuickGOQ8IXS6
Ontology : AmiGOplasma membrane  regulation of cell shape  
Ontology : EGO-EBIplasma membrane  regulation of cell shape  
NDEx NetworkPALM2
Atlas of Cancer Signalling NetworkPALM2
Wikipedia pathwaysPALM2
Orthology - Evolution
OrthoDB114299
GeneTree (enSembl)ENSG00000243444
Phylogenetic Trees/Animal Genes : TreeFamPALM2
HOVERGENQ8IXS6
HOGENOMQ8IXS6
Homologs : HomoloGenePALM2
Homology/Alignments : Family Browser (UCSC)PALM2
Gene fusions - Rearrangements
Fusion : MitelmanKPNA4/PALM2 [3q25.33/9q31.3]  [t(3;9)(q25;q31)]  
Fusion : MitelmanPALM2/AKAP2 [9q31.3/9q31.3]  [t(9;9)(q31;q31)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPALM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PALM2
dbVarPALM2
ClinVarPALM2
1000_GenomesPALM2 
Exome Variant ServerPALM2
ExAC (Exome Aggregation Consortium)PALM2 (select the gene name)
Genetic variants : HAPMAP114299
Genomic Variants (DGV)PALM2 [DGVbeta]
DECIPHERPALM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPALM2 
Mutations
ICGC Data PortalPALM2 
TCGA Data PortalPALM2 
Broad Tumor PortalPALM2
OASIS PortalPALM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPALM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPALM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PALM2
DgiDB (Drug Gene Interaction Database)PALM2
DoCM (Curated mutations)PALM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PALM2 (select a term)
intoGenPALM2
Cancer3DPALM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPALM2
Genetic Testing Registry PALM2
NextProtQ8IXS6 [Medical]
TSGene114299
GENETestsPALM2
Target ValidationPALM2
Huge Navigator PALM2 [HugePedia]
snp3D : Map Gene to Disease114299
BioCentury BCIQPALM2
ClinGenPALM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114299
Chemical/Pharm GKB GenePA32924
Clinical trialPALM2
Miscellaneous
canSAR (ICR)PALM2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePALM2
EVEXPALM2
GoPubMedPALM2
iHOPPALM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:48:25 CEST 2017

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