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PALM3 (paralemmin 3)

Identity

Other alias-
HGNC (Hugo) PALM3
LocusID (NCBI) 342979
Atlas_Id 71641
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 14053367 and ends at 14059159 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KRT8 (12q13.13) / PALM3 (19p13.12)PALM3 (19p13.12) / SLC17A7 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PALM3   33274
Cards
Entrez_Gene (NCBI)PALM3  342979  paralemmin 3
Aliases
GeneCards (Weizmann)PALM3
Ensembl hg19 (Hinxton)ENSG00000187867 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187867 [Gene_View]  chr19:14053367-14059159 [Contig_View]  PALM3 [Vega]
ICGC DataPortalENSG00000187867
TCGA cBioPortalPALM3
AceView (NCBI)PALM3
Genatlas (Paris)PALM3
WikiGenes342979
SOURCE (Princeton)PALM3
Genetics Home Reference (NIH)PALM3
Genomic and cartography
GoldenPath hg38 (UCSC)PALM3  -     chr19:14053367-14059159 -  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PALM3  -     19p13.12   [Description]    (hg19-Feb_2009)
EnsemblPALM3 - 19p13.12 [CytoView hg19]  PALM3 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBIPALM3 [Mapview hg19]  PALM3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW130597 BG014761 CR747190
RefSeq transcript (Entrez)NM_001145028
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PALM3
Cluster EST : UnigeneHs.444298 [ NCBI ]
CGAP (NCI)Hs.444298
Alternative Splicing GalleryENSG00000187867
Gene ExpressionPALM3 [ NCBI-GEO ]   PALM3 [ EBI - ARRAY_EXPRESS ]   PALM3 [ SEEK ]   PALM3 [ MEM ]
Gene Expression Viewer (FireBrowse)PALM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342979
GTEX Portal (Tissue expression)PALM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDB9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDB9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDB9
Splice isoforms : SwissVarA6NDB9
PhosPhoSitePlusA6NDB9
Domains : Interpro (EBI)Paralemmin-3   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PALM3
DMDM Disease mutations342979
Blocks (Seattle)PALM3
SuperfamilyA6NDB9
Human Protein AtlasENSG00000187867
Peptide AtlasA6NDB9
IPIIPI00247674   
Protein Interaction databases
DIP (DOE-UCLA)A6NDB9
IntAct (EBI)A6NDB9
FunCoupENSG00000187867
BioGRIDPALM3
STRING (EMBL)PALM3
ZODIACPALM3
Ontologies - Pathways
QuickGOA6NDB9
Ontology : AmiGOnegative regulation of cytokine-mediated signaling pathway  protein binding  ATP binding  cytoplasm  plasma membrane  Toll signaling pathway  response to lipopolysaccharide  
Ontology : EGO-EBInegative regulation of cytokine-mediated signaling pathway  protein binding  ATP binding  cytoplasm  plasma membrane  Toll signaling pathway  response to lipopolysaccharide  
NDEx NetworkPALM3
Atlas of Cancer Signalling NetworkPALM3
Wikipedia pathwaysPALM3
Orthology - Evolution
OrthoDB342979
GeneTree (enSembl)ENSG00000187867
Phylogenetic Trees/Animal Genes : TreeFamPALM3
HOVERGENA6NDB9
HOGENOMA6NDB9
Homologs : HomoloGenePALM3
Homology/Alignments : Family Browser (UCSC)PALM3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPALM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PALM3
dbVarPALM3
ClinVarPALM3
1000_GenomesPALM3 
Exome Variant ServerPALM3
ExAC (Exome Aggregation Consortium)PALM3 (select the gene name)
Genetic variants : HAPMAP342979
Genomic Variants (DGV)PALM3 [DGVbeta]
DECIPHERPALM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPALM3 
Mutations
ICGC Data PortalPALM3 
TCGA Data PortalPALM3 
Broad Tumor PortalPALM3
OASIS PortalPALM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPALM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPALM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PALM3
DgiDB (Drug Gene Interaction Database)PALM3
DoCM (Curated mutations)PALM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PALM3 (select a term)
intoGenPALM3
Cancer3DPALM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPALM3
Genetic Testing Registry PALM3
NextProtA6NDB9 [Medical]
TSGene342979
GENETestsPALM3
Target ValidationPALM3
Huge Navigator PALM3 [HugePedia]
snp3D : Map Gene to Disease342979
BioCentury BCIQPALM3
ClinGenPALM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342979
Chemical/Pharm GKB GenePA165393890
Clinical trialPALM3
Miscellaneous
canSAR (ICR)PALM3 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePALM3
EVEXPALM3
GoPubMedPALM3
iHOPPALM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:28 CEST 2017

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