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PALMD (palmdelphin)

Identity

Alias_namesC1orf11
Alias_symbol (synonym)FLJ20271
PALML
Other alias
HGNC (Hugo) PALMD
LocusID (NCBI) 54873
Atlas_Id 71642
Location 1p21.2  [Link to chromosome band 1p21]
Location_base_pair Starts at 100111431 and ends at 100160097 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PALMD (1p21.2) / PALMD (1p21.2)SENP5 (3q29) / PALMD (1p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PALMD   15846
Cards
Entrez_Gene (NCBI)PALMD  54873  palmdelphin
AliasesC1orf11; PALML
GeneCards (Weizmann)PALMD
Ensembl hg19 (Hinxton)ENSG00000099260 [Gene_View]  chr1:100111431-100160097 [Contig_View]  PALMD [Vega]
Ensembl hg38 (Hinxton)ENSG00000099260 [Gene_View]  chr1:100111431-100160097 [Contig_View]  PALMD [Vega]
ICGC DataPortalENSG00000099260
TCGA cBioPortalPALMD
AceView (NCBI)PALMD
Genatlas (Paris)PALMD
WikiGenes54873
SOURCE (Princeton)PALMD
Genetics Home Reference (NIH)PALMD
Genomic and cartography
GoldenPath hg19 (UCSC)PALMD  -     chr1:100111431-100160097 +  1p21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PALMD  -     1p21.2   [Description]    (hg38-Dec_2013)
EnsemblPALMD - 1p21.2 [CytoView hg19]  PALMD - 1p21.2 [CytoView hg38]
Mapping of homologs : NCBIPALMD [Mapview hg19]  PALMD [Mapview hg38]
OMIM610182   
Gene and transcription
Genbank (Entrez)AF262379 AJ312214 AK000278 AK024654 AL390969
RefSeq transcript (Entrez)NM_017734
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)PALMD
Cluster EST : UnigeneHs.483993 [ NCBI ]
CGAP (NCI)Hs.483993
Alternative Splicing GalleryENSG00000099260
Gene ExpressionPALMD [ NCBI-GEO ]   PALMD [ EBI - ARRAY_EXPRESS ]   PALMD [ SEEK ]   PALMD [ MEM ]
Gene Expression Viewer (FireBrowse)PALMD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54873
GTEX Portal (Tissue expression)PALMD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP74   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP74  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP74
Splice isoforms : SwissVarQ9NP74
PhosPhoSitePlusQ9NP74
Domains : Interpro (EBI)Paralemmin   
Domain families : Pfam (Sanger)Paralemmin (PF03285)   
Domain families : Pfam (NCBI)pfam03285   
Conserved Domain (NCBI)PALMD
DMDM Disease mutations54873
Blocks (Seattle)PALMD
SuperfamilyQ9NP74
Human Protein AtlasENSG00000099260
Peptide AtlasQ9NP74
HPRD06673
IPIIPI00015578   IPI00807440   IPI00807464   
Protein Interaction databases
DIP (DOE-UCLA)Q9NP74
IntAct (EBI)Q9NP74
FunCoupENSG00000099260
BioGRIDPALMD
STRING (EMBL)PALMD
ZODIACPALMD
Ontologies - Pathways
QuickGOQ9NP74
Ontology : AmiGOcytoplasm  regulation of cell shape  membrane  dendritic spine  
Ontology : EGO-EBIcytoplasm  regulation of cell shape  membrane  dendritic spine  
NDEx NetworkPALMD
Atlas of Cancer Signalling NetworkPALMD
Wikipedia pathwaysPALMD
Orthology - Evolution
OrthoDB54873
GeneTree (enSembl)ENSG00000099260
Phylogenetic Trees/Animal Genes : TreeFamPALMD
HOVERGENQ9NP74
HOGENOMQ9NP74
Homologs : HomoloGenePALMD
Homology/Alignments : Family Browser (UCSC)PALMD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPALMD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PALMD
dbVarPALMD
ClinVarPALMD
1000_GenomesPALMD 
Exome Variant ServerPALMD
ExAC (Exome Aggregation Consortium)PALMD (select the gene name)
Genetic variants : HAPMAP54873
Genomic Variants (DGV)PALMD [DGVbeta]
DECIPHER (Syndromes)1:100111431-100160097  ENSG00000099260
CONAN: Copy Number AnalysisPALMD 
Mutations
ICGC Data PortalPALMD 
TCGA Data PortalPALMD 
Broad Tumor PortalPALMD
OASIS PortalPALMD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPALMD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPALMD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PALMD
DgiDB (Drug Gene Interaction Database)PALMD
DoCM (Curated mutations)PALMD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PALMD (select a term)
intoGenPALMD
Cancer3DPALMD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610182   
Orphanet
MedgenPALMD
Genetic Testing Registry PALMD
NextProtQ9NP74 [Medical]
TSGene54873
GENETestsPALMD
Huge Navigator PALMD [HugePedia]
snp3D : Map Gene to Disease54873
BioCentury BCIQPALMD
ClinGenPALMD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54873
Chemical/Pharm GKB GenePA32925
Clinical trialPALMD
Miscellaneous
canSAR (ICR)PALMD (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePALMD
EVEXPALMD
GoPubMedPALMD
iHOPPALMD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:37:43 CET 2017

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