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PAM16 (presequence translocase associated motor 16 homolog)

Identity

Alias_namespresequence translocase-associated motor 16 homolog (S. cerevisiae)
Alias_symbol (synonym)Magmas
Tim16
TIMM16
Other aliasCGI-136
MAGMAS
SMDMDM
TIM16
HGNC (Hugo) PAM16
LocusID (NCBI) 51025
Atlas_Id 51663
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4340251 and ends at 4351372 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CORO7 (16p13.3) / PAM16 (16p13.3)LPXN (11q12.1) / PAM16 (16p13.3)PAM16 (16p13.3) / CORO7 (16p13.3)
PAM16 (16p13.3) / TSPAN3 (15q24.3)PAM16 16p13.3 / CORO7 16p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PAM16   29679
Cards
Entrez_Gene (NCBI)PAM16  51025  presequence translocase associated motor 16 homolog
AliasesCGI-136; MAGMAS; SMDMDM; TIM16; 
TIMM16
GeneCards (Weizmann)PAM16
Ensembl hg19 (Hinxton)ENSG00000217930 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000217930 [Gene_View]  chr16:4340251-4351372 [Contig_View]  PAM16 [Vega]
ICGC DataPortalENSG00000217930
TCGA cBioPortalPAM16
AceView (NCBI)PAM16
Genatlas (Paris)PAM16
WikiGenes51025
SOURCE (Princeton)PAM16
Genetics Home Reference (NIH)PAM16
Genomic and cartography
GoldenPath hg38 (UCSC)PAM16  -     chr16:4340251-4351372 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAM16  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblPAM16 - 16p13.3 [CytoView hg19]  PAM16 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIPAM16 [Mapview hg19]  PAM16 [Mapview hg38]
OMIM613320   614336   
Gene and transcription
Genbank (Entrez)AF151894 AF349455 AK026514 BC005024 BG715429
RefSeq transcript (Entrez)NM_016069
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187608
Consensus coding sequences : CCDS (NCBI)PAM16
Cluster EST : UnigeneHs.730693 [ NCBI ]
CGAP (NCI)Hs.730693
Alternative Splicing GalleryENSG00000217930
Gene ExpressionPAM16 [ NCBI-GEO ]   PAM16 [ EBI - ARRAY_EXPRESS ]   PAM16 [ SEEK ]   PAM16 [ MEM ]
Gene Expression Viewer (FireBrowse)PAM16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51025
GTEX Portal (Tissue expression)PAM16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3D7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3D7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3D7
Splice isoforms : SwissVarQ9Y3D7
PhosPhoSitePlusQ9Y3D7
Domains : Interpro (EBI)Tim16   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PAM16
DMDM Disease mutations51025
Blocks (Seattle)PAM16
SuperfamilyQ9Y3D7
Human Protein AtlasENSG00000217930
Peptide AtlasQ9Y3D7
HPRD14798
IPIIPI00218463   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3D7
IntAct (EBI)Q9Y3D7
FunCoupENSG00000217930
BioGRIDPAM16
STRING (EMBL)PAM16
ZODIACPAM16
Ontologies - Pathways
QuickGOQ9Y3D7
Ontology : AmiGOpresequence translocase-associated import motor  ossification  protein binding  mitochondrial matrix  protein import into mitochondrial matrix  extrinsic component of mitochondrial inner membrane  negative regulation of ATPase activity  protein complex  
Ontology : EGO-EBIpresequence translocase-associated import motor  ossification  protein binding  mitochondrial matrix  protein import into mitochondrial matrix  extrinsic component of mitochondrial inner membrane  negative regulation of ATPase activity  protein complex  
NDEx NetworkPAM16
Atlas of Cancer Signalling NetworkPAM16
Wikipedia pathwaysPAM16
Orthology - Evolution
OrthoDB51025
GeneTree (enSembl)ENSG00000217930
Phylogenetic Trees/Animal Genes : TreeFamPAM16
HOVERGENQ9Y3D7
HOGENOMQ9Y3D7
Homologs : HomoloGenePAM16
Homology/Alignments : Family Browser (UCSC)PAM16
Gene fusions - Rearrangements
Fusion : MitelmanPAM16/CORO7 [16p13.3/16p13.3]  
Fusion: TCGAPAM16 16p13.3 CORO7 16p13.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAM16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAM16
dbVarPAM16
ClinVarPAM16
1000_GenomesPAM16 
Exome Variant ServerPAM16
ExAC (Exome Aggregation Consortium)PAM16 (select the gene name)
Genetic variants : HAPMAP51025
Genomic Variants (DGV)PAM16 [DGVbeta]
DECIPHERPAM16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPAM16 
Mutations
ICGC Data PortalPAM16 
TCGA Data PortalPAM16 
Broad Tumor PortalPAM16
OASIS PortalPAM16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAM16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPAM16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PAM16
DgiDB (Drug Gene Interaction Database)PAM16
DoCM (Curated mutations)PAM16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAM16 (select a term)
intoGenPAM16
Cancer3DPAM16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613320    614336   
Orphanet22862   
MedgenPAM16
Genetic Testing Registry PAM16
NextProtQ9Y3D7 [Medical]
TSGene51025
GENETestsPAM16
Target ValidationPAM16
Huge Navigator PAM16 [HugePedia]
snp3D : Map Gene to Disease51025
BioCentury BCIQPAM16
ClinGenPAM16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51025
Chemical/Pharm GKB GenePA166048989
Clinical trialPAM16
Miscellaneous
canSAR (ICR)PAM16 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAM16
EVEXPAM16
GoPubMedPAM16
iHOPPAM16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:23:41 CEST 2017

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