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PAMR1 (peptidase domain containing associated with muscle regeneration 1)

Identity

Alias_symbol (synonym)RAMP
DKFZP586H2123
Other aliasFP938
HGNC (Hugo) PAMR1
LocusID (NCBI) 25891
Atlas_Id 55357
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 35453376 and ends at 35547579 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PAMR1   24554
Cards
Entrez_Gene (NCBI)PAMR1  25891  peptidase domain containing associated with muscle regeneration 1
AliasesDKFZP586H2123; FP938; RAMP
GeneCards (Weizmann)PAMR1
Ensembl hg19 (Hinxton)ENSG00000149090 [Gene_View]  chr11:35453376-35547579 [Contig_View]  PAMR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000149090 [Gene_View]  chr11:35453376-35547579 [Contig_View]  PAMR1 [Vega]
ICGC DataPortalENSG00000149090
TCGA cBioPortalPAMR1
AceView (NCBI)PAMR1
Genatlas (Paris)PAMR1
WikiGenes25891
SOURCE (Princeton)PAMR1
Genetics Home Reference (NIH)PAMR1
Genomic and cartography
GoldenPath hg19 (UCSC)PAMR1  -     chr11:35453376-35547579 -  11p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PAMR1  -     11p13   [Description]    (hg38-Dec_2013)
EnsemblPAMR1 - 11p13 [CytoView hg19]  PAMR1 - 11p13 [CytoView hg38]
Mapping of homologs : NCBIPAMR1 [Mapview hg19]  PAMR1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF370388 AK027841 AK297092 AK300185 AK316188
RefSeq transcript (Entrez)NM_001001991 NM_001282675 NM_001282676 NM_015430
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)PAMR1
Cluster EST : UnigeneHs.55044 [ NCBI ]
CGAP (NCI)Hs.55044
Alternative Splicing GalleryENSG00000149090
Gene ExpressionPAMR1 [ NCBI-GEO ]   PAMR1 [ EBI - ARRAY_EXPRESS ]   PAMR1 [ SEEK ]   PAMR1 [ MEM ]
Gene Expression Viewer (FireBrowse)PAMR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25891
GTEX Portal (Tissue expression)PAMR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXH9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXH9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXH9
Splice isoforms : SwissVarQ6UXH9
PhosPhoSitePlusQ6UXH9
Domaine pattern : Prosite (Expaxy)CUB (PS01180)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    SUSHI (PS50923)    TRYPSIN_DOM (PS50240)   
Domains : Interpro (EBI)CUB_dom    EGF-like_CS    EGF-like_dom    Peptidase_S1_PA    Peptidase_S1A    Sushi_SCR_CCP_dom    Trypsin_dom   
Domain families : Pfam (Sanger)CUB (PF00431)    EGF (PF00008)    Sushi (PF00084)    Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00431    pfam00008    pfam00084    pfam00089   
Domain families : Smart (EMBL)CCP (SM00032)  CUB (SM00042)  EGF (SM00181)  Tryp_SPc (SM00020)  
Conserved Domain (NCBI)PAMR1
DMDM Disease mutations25891
Blocks (Seattle)PAMR1
SuperfamilyQ6UXH9
Human Protein AtlasENSG00000149090
Peptide AtlasQ6UXH9
HPRD07104
IPIIPI00456672   IPI00064429   IPI00654633   IPI00981182   IPI00982534   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXH9
IntAct (EBI)Q6UXH9
FunCoupENSG00000149090
BioGRIDPAMR1
STRING (EMBL)PAMR1
ZODIACPAMR1
Ontologies - Pathways
QuickGOQ6UXH9
Ontology : AmiGOcalcium ion binding  extracellular region  
Ontology : EGO-EBIcalcium ion binding  extracellular region  
NDEx NetworkPAMR1
Atlas of Cancer Signalling NetworkPAMR1
Wikipedia pathwaysPAMR1
Orthology - Evolution
OrthoDB25891
GeneTree (enSembl)ENSG00000149090
Phylogenetic Trees/Animal Genes : TreeFamPAMR1
HOVERGENQ6UXH9
HOGENOMQ6UXH9
Homologs : HomoloGenePAMR1
Homology/Alignments : Family Browser (UCSC)PAMR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAMR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAMR1
dbVarPAMR1
ClinVarPAMR1
1000_GenomesPAMR1 
Exome Variant ServerPAMR1
ExAC (Exome Aggregation Consortium)PAMR1 (select the gene name)
Genetic variants : HAPMAP25891
Genomic Variants (DGV)PAMR1 [DGVbeta]
DECIPHER (Syndromes)11:35453376-35547579  ENSG00000149090
CONAN: Copy Number AnalysisPAMR1 
Mutations
ICGC Data PortalPAMR1 
TCGA Data PortalPAMR1 
Broad Tumor PortalPAMR1
OASIS PortalPAMR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAMR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPAMR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PAMR1
DgiDB (Drug Gene Interaction Database)PAMR1
DoCM (Curated mutations)PAMR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAMR1 (select a term)
intoGenPAMR1
Cancer3DPAMR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPAMR1
Genetic Testing Registry PAMR1
NextProtQ6UXH9 [Medical]
TSGene25891
GENETestsPAMR1
Huge Navigator PAMR1 [HugePedia]
snp3D : Map Gene to Disease25891
BioCentury BCIQPAMR1
ClinGenPAMR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25891
Chemical/Pharm GKB GenePA164724339
Clinical trialPAMR1
Miscellaneous
canSAR (ICR)PAMR1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAMR1
EVEXPAMR1
GoPubMedPAMR1
iHOPPAMR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:13:28 CEST 2017

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