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PANCR (PITX2 adjacent non-coding RNA)

Identity

Other alias-
HGNC (Hugo) PANCR
LocusID (NCBI) 110231149
Atlas_Id 79429
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 110595513 and ends at 110615458 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)PANCR   52282
Cards
Entrez_Gene (NCBI)PANCR  110231149  PITX2 adjacent non-coding RNA
Aliases
GeneCards (Weizmann)PANCR
Ensembl hg19 (Hinxton)ENSG00000250103 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250103 [Gene_View]  ENSG00000250103 [Sequence]  chr4:110595513-110615458 [Contig_View]  PANCR [Vega]
ICGC DataPortalENSG00000250103
TCGA cBioPortalPANCR
AceView (NCBI)PANCR
Genatlas (Paris)PANCR
WikiGenes110231149
SOURCE (Princeton)PANCR
Genetics Home Reference (NIH)PANCR
Genomic and cartography
GoldenPath hg38 (UCSC)PANCR  -     chr4:110595513-110615458 -  4q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PANCR  -     4q25   [Description]    (hg19-Feb_2009)
EnsemblPANCR - 4q25 [CytoView hg19]  PANCR - 4q25 [CytoView hg38]
Mapping of homologs : NCBIPANCR [Mapview hg19]  PANCR [Mapview hg38]
OMIM617286   
Gene and transcription
Genbank (Entrez)BM710479 BU734267 DB462682
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PANCR
Cluster EST : UnigeneHs.436030 [ NCBI ]
CGAP (NCI)Hs.436030
Alternative Splicing GalleryENSG00000250103
Gene ExpressionPANCR [ NCBI-GEO ]   PANCR [ EBI - ARRAY_EXPRESS ]   PANCR [ SEEK ]   PANCR [ MEM ]
Gene Expression Viewer (FireBrowse)PANCR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)110231149
GTEX Portal (Tissue expression)PANCR
Human Protein AtlasENSG00000250103-PANCR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PANCR
DMDM Disease mutations110231149
Blocks (Seattle)PANCR
Human Protein Atlas [tissue]ENSG00000250103-PANCR [tissue]
Protein Interaction databases
FunCoupENSG00000250103
BioGRIDPANCR
STRING (EMBL)PANCR
ZODIACPANCR
Ontologies - Pathways
Huge Navigator PANCR [HugePedia]
snp3D : Map Gene to Disease110231149
BioCentury BCIQPANCR
ClinGenPANCR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD110231149
Clinical trialPANCR
Miscellaneous
canSAR (ICR)PANCR (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePANCR
EVEXPANCR
GoPubMedPANCR
iHOPPANCR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:22:58 CEST 2018

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