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PANK2 (pantothenate kinase 2)

Identity

Alias (NCBI)C20orf48
HARP
HSS
NBIA1
PKAN
HGNC (Hugo) PANK2
HGNC Alias symbHSS
FLJ11729
PKAN
HARP
HGNC Alias nameHallervorden-Spatz syndrome
HGNC Previous nameC20orf48
 NBIA1
HGNC Previous nameneurodegeneration with brain iron accumulation 1 (Hallervorden-Spatz syndrome)
LocusID (NCBI) 80025
Atlas_Id 71648
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 3889802 and ends at 3929882 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COL11A1 (1p21.1) / PANK2 (20p13)EPS15L1 (19p13.11) / PANK2 (20p13)PANK2 (20p13) / ACACB (12q24.11)
PANK2 (20p13) / MAVS (20p13)PANK2 (20p13) / PANK2 (20p13)PANK2 (20p13) / VAMP3 (1p36.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)PANK2   15894
LRG (Locus Reference Genomic)LRG_1016
Cards
Entrez_Gene (NCBI)PANK2    pantothenate kinase 2
AliasesC20orf48; HARP; HSS; NBIA1; 
PKAN
GeneCards (Weizmann)PANK2
Ensembl hg19 (Hinxton)ENSG00000125779 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125779 [Gene_View]  ENSG00000125779 [Sequence]  chr20:3889802-3929882 [Contig_View]  PANK2 [Vega]
ICGC DataPortalENSG00000125779
TCGA cBioPortalPANK2
AceView (NCBI)PANK2
Genatlas (Paris)PANK2
SOURCE (Princeton)PANK2
Genetics Home Reference (NIH)PANK2
Genomic and cartography
GoldenPath hg38 (UCSC)PANK2  -     chr20:3889802-3929882 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PANK2  -     20p13   [Description]    (hg19-Feb_2009)
GoldenPathPANK2 - 20p13 [CytoView hg19]  PANK2 - 20p13 [CytoView hg38]
ImmunoBaseENSG00000125779
Genome Data Viewer NCBIPANK2 [Mapview hg19]  
OMIM234200   606157   607236   
Gene and transcription
Genbank (Entrez)AF086501 AF494409 AK021791 AK097796 AK310190
RefSeq transcript (Entrez)NM_001324191 NM_001324192 NM_001324193 NM_001386393 NM_024960 NM_153637 NM_153638 NM_153639 NM_153640 NM_153641
Consensus coding sequences : CCDS (NCBI)PANK2
Gene ExpressionPANK2 [ NCBI-GEO ]   PANK2 [ EBI - ARRAY_EXPRESS ]   PANK2 [ SEEK ]   PANK2 [ MEM ]
Gene Expression Viewer (FireBrowse)PANK2 [ Firebrowse - Broad ]
GenevisibleExpression of PANK2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80025
GTEX Portal (Tissue expression)PANK2
Human Protein AtlasENSG00000125779-PANK2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PANK2
Human Protein Atlas [tissue]ENSG00000125779-PANK2 [tissue]
Protein Interaction databases
BioGRIDPANK2
STRING (EMBL)PANK2
ZODIACPANK2
Ontologies - Pathways
Litterature
PubMed82 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPANK2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:15:24 CEST 2021

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