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PANK3 (pantothenate kinase 3)

Identity

Alias_symbol (synonym)FLJ12899
Other alias-
HGNC (Hugo) PANK3
LocusID (NCBI) 79646
Atlas_Id 71649
Location 5q34  [Link to chromosome band 5q34]
Location_base_pair Starts at 167982628 and ends at 168006614 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PANK3 (5q34) / SLC25A32 (8q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PANK3   19365
Cards
Entrez_Gene (NCBI)PANK3  79646  pantothenate kinase 3
Aliases
GeneCards (Weizmann)PANK3
Ensembl hg19 (Hinxton) [Gene_View]  chr5:167982628-168006614 [Contig_View]  PANK3 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:167982628-168006614 [Contig_View]  PANK3 [Vega]
TCGA cBioPortalPANK3
AceView (NCBI)PANK3
Genatlas (Paris)PANK3
WikiGenes79646
SOURCE (Princeton)PANK3
Genetics Home Reference (NIH)PANK3
Genomic and cartography
GoldenPath hg19 (UCSC)PANK3  -     chr5:167982628-168006614 -  5q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PANK3  -     5q34   [Description]    (hg38-Dec_2013)
EnsemblPANK3 - 5q34 [CytoView hg19]  PANK3 - 5q34 [CytoView hg38]
Mapping of homologs : NCBIPANK3 [Mapview hg19]  PANK3 [Mapview hg38]
OMIM606161   
Gene and transcription
Genbank (Entrez)AA831520 AK022961 AK223285 BC013705 BC047113
RefSeq transcript (Entrez)NM_024594
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)PANK3
Cluster EST : UnigeneHs.591729 [ NCBI ]
CGAP (NCI)Hs.591729
Gene ExpressionPANK3 [ NCBI-GEO ]   PANK3 [ EBI - ARRAY_EXPRESS ]   PANK3 [ SEEK ]   PANK3 [ MEM ]
Gene Expression Viewer (FireBrowse)PANK3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79646
GTEX Portal (Tissue expression)PANK3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H999   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H999  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H999
Splice isoforms : SwissVarQ9H999
Catalytic activity : Enzyme2.7.1.33 [ Enzyme-Expasy ]   2.7.1.332.7.1.33 [ IntEnz-EBI ]   2.7.1.33 [ BRENDA ]   2.7.1.33 [ KEGG ]   
PhosPhoSitePlusQ9H999
Domains : Interpro (EBI)Type_II_PanK   
Domain families : Pfam (Sanger)Fumble (PF03630)   
Domain families : Pfam (NCBI)pfam03630   
Conserved Domain (NCBI)PANK3
DMDM Disease mutations79646
Blocks (Seattle)PANK3
PDB (SRS)2I7P    3MK6    3SMS   
PDB (PDBSum)2I7P    3MK6    3SMS   
PDB (IMB)2I7P    3MK6    3SMS   
PDB (RSDB)2I7P    3MK6    3SMS   
Structural Biology KnowledgeBase2I7P    3MK6    3SMS   
SCOP (Structural Classification of Proteins)2I7P    3MK6    3SMS   
CATH (Classification of proteins structures)2I7P    3MK6    3SMS   
SuperfamilyQ9H999
Peptide AtlasQ9H999
HPRD07312
IPIIPI00178232   IPI00979254   IPI00978308   
Protein Interaction databases
DIP (DOE-UCLA)Q9H999
IntAct (EBI)Q9H999
BioGRIDPANK3
STRING (EMBL)PANK3
ZODIACPANK3
Ontologies - Pathways
QuickGOQ9H999
Ontology : AmiGOpantothenate kinase activity  ATP binding  cytoplasm  coenzyme A biosynthetic process  phosphorylation  
Ontology : EGO-EBIpantothenate kinase activity  ATP binding  cytoplasm  coenzyme A biosynthetic process  phosphorylation  
Pathways : KEGGPantothenate and CoA biosynthesis   
NDEx NetworkPANK3
Atlas of Cancer Signalling NetworkPANK3
Wikipedia pathwaysPANK3
Orthology - Evolution
OrthoDB79646
Phylogenetic Trees/Animal Genes : TreeFamPANK3
HOVERGENQ9H999
HOGENOMQ9H999
Homologs : HomoloGenePANK3
Homology/Alignments : Family Browser (UCSC)PANK3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPANK3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PANK3
dbVarPANK3
ClinVarPANK3
1000_GenomesPANK3 
Exome Variant ServerPANK3
ExAC (Exome Aggregation Consortium)PANK3 (select the gene name)
Genetic variants : HAPMAP79646
Genomic Variants (DGV)PANK3 [DGVbeta]
DECIPHER (Syndromes)5:167982628-168006614  
CONAN: Copy Number AnalysisPANK3 
Mutations
ICGC Data PortalPANK3 
TCGA Data PortalPANK3 
Broad Tumor PortalPANK3
OASIS PortalPANK3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPANK3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPANK3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PANK3
DgiDB (Drug Gene Interaction Database)PANK3
DoCM (Curated mutations)PANK3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PANK3 (select a term)
intoGenPANK3
Cancer3DPANK3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606161   
Orphanet
MedgenPANK3
Genetic Testing Registry PANK3
NextProtQ9H999 [Medical]
TSGene79646
GENETestsPANK3
Huge Navigator PANK3 [HugePedia]
snp3D : Map Gene to Disease79646
BioCentury BCIQPANK3
ClinGenPANK3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79646
Chemical/Pharm GKB GenePA134903180
Clinical trialPANK3
Miscellaneous
canSAR (ICR)PANK3 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePANK3
EVEXPANK3
GoPubMedPANK3
iHOPPANK3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:45 CET 2017

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