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PANK4 (pantothenate kinase 4)

Identity

Alias_symbol (synonym)FLJ10782
Other alias-
HGNC (Hugo) PANK4
LocusID (NCBI) 55229
Atlas_Id 71650
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 2439970 and ends at 2458067 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PANK4 (1p36.32) / NOC4L (12q24.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PANK4   19366
Cards
Entrez_Gene (NCBI)PANK4  55229  pantothenate kinase 4
Aliases
GeneCards (Weizmann)PANK4
Ensembl hg19 (Hinxton)ENSG00000157881 [Gene_View]  chr1:2439970-2458067 [Contig_View]  PANK4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000157881 [Gene_View]  chr1:2439970-2458067 [Contig_View]  PANK4 [Vega]
ICGC DataPortalENSG00000157881
TCGA cBioPortalPANK4
AceView (NCBI)PANK4
Genatlas (Paris)PANK4
WikiGenes55229
SOURCE (Princeton)PANK4
Genetics Home Reference (NIH)PANK4
Genomic and cartography
GoldenPath hg19 (UCSC)PANK4  -     chr1:2439970-2458067 -  1p36.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PANK4  -     1p36.32   [Description]    (hg38-Dec_2013)
EnsemblPANK4 - 1p36.32 [CytoView hg19]  PANK4 - 1p36.32 [CytoView hg38]
Mapping of homologs : NCBIPANK4 [Mapview hg19]  PANK4 [Mapview hg38]
OMIM606162   
Gene and transcription
Genbank (Entrez)AI301430 AK001644 AK223546 AK295301 AK303127
RefSeq transcript (Entrez)NM_018216
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NT_187515 NW_004929288
Consensus coding sequences : CCDS (NCBI)PANK4
Cluster EST : UnigeneHs.26156 [ NCBI ]
CGAP (NCI)Hs.26156
Alternative Splicing GalleryENSG00000157881
Gene ExpressionPANK4 [ NCBI-GEO ]   PANK4 [ EBI - ARRAY_EXPRESS ]   PANK4 [ SEEK ]   PANK4 [ MEM ]
Gene Expression Viewer (FireBrowse)PANK4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55229
GTEX Portal (Tissue expression)PANK4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVE7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVE7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVE7
Splice isoforms : SwissVarQ9NVE7
Catalytic activity : Enzyme2.7.1.33 [ Enzyme-Expasy ]   2.7.1.332.7.1.33 [ IntEnz-EBI ]   2.7.1.33 [ BRENDA ]   2.7.1.33 [ KEGG ]   
PhosPhoSitePlusQ9NVE7
Domains : Interpro (EBI)DUF89    PanK_long    Type_II_PanK   
Domain families : Pfam (Sanger)DUF89 (PF01937)    Fumble (PF03630)   
Domain families : Pfam (NCBI)pfam01937    pfam03630   
Conserved Domain (NCBI)PANK4
DMDM Disease mutations55229
Blocks (Seattle)PANK4
SuperfamilyQ9NVE7
Human Protein AtlasENSG00000157881
Peptide AtlasQ9NVE7
HPRD07313
IPIIPI00018946   IPI00470832   IPI00968084   IPI00910339   IPI00967885   IPI00967633   IPI00966534   IPI00967310   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVE7
IntAct (EBI)Q9NVE7
FunCoupENSG00000157881
BioGRIDPANK4
STRING (EMBL)PANK4
ZODIACPANK4
Ontologies - Pathways
QuickGOQ9NVE7
Ontology : AmiGOpantothenate kinase activity  ATP binding  cytoplasm  coenzyme A biosynthetic process  phosphorylation  
Ontology : EGO-EBIpantothenate kinase activity  ATP binding  cytoplasm  coenzyme A biosynthetic process  phosphorylation  
Pathways : KEGGPantothenate and CoA biosynthesis   
NDEx NetworkPANK4
Atlas of Cancer Signalling NetworkPANK4
Wikipedia pathwaysPANK4
Orthology - Evolution
OrthoDB55229
GeneTree (enSembl)ENSG00000157881
Phylogenetic Trees/Animal Genes : TreeFamPANK4
HOVERGENQ9NVE7
HOGENOMQ9NVE7
Homologs : HomoloGenePANK4
Homology/Alignments : Family Browser (UCSC)PANK4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPANK4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PANK4
dbVarPANK4
ClinVarPANK4
1000_GenomesPANK4 
Exome Variant ServerPANK4
ExAC (Exome Aggregation Consortium)PANK4 (select the gene name)
Genetic variants : HAPMAP55229
Genomic Variants (DGV)PANK4 [DGVbeta]
DECIPHER (Syndromes)1:2439970-2458067  ENSG00000157881
CONAN: Copy Number AnalysisPANK4 
Mutations
ICGC Data PortalPANK4 
TCGA Data PortalPANK4 
Broad Tumor PortalPANK4
OASIS PortalPANK4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPANK4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPANK4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PANK4
DgiDB (Drug Gene Interaction Database)PANK4
DoCM (Curated mutations)PANK4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PANK4 (select a term)
intoGenPANK4
Cancer3DPANK4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606162   
Orphanet
MedgenPANK4
Genetic Testing Registry PANK4
NextProtQ9NVE7 [Medical]
TSGene55229
GENETestsPANK4
Huge Navigator PANK4 [HugePedia]
snp3D : Map Gene to Disease55229
BioCentury BCIQPANK4
ClinGenPANK4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55229
Chemical/Pharm GKB GenePA134887214
Clinical trialPANK4
Miscellaneous
canSAR (ICR)PANK4 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePANK4
EVEXPANK4
GoPubMedPANK4
iHOPPANK4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:45 CET 2017

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