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PAPD4 (poly(A) RNA polymerase D4, non-canonical)

Identity

Alias_namesPAP associated domain containing 4
Alias_symbol (synonym)FLJ38499
GLD2
TUT2
Other alias
HGNC (Hugo) PAPD4
LocusID (NCBI) 167153
Atlas_Id 71651
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 79612417 and ends at 79688243 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CPNE1 (20q11.22) / PAPD4 (5q14.1)PAPD4 (5q14.1) / PAPD4 (5q14.1)RBM10 (Xp11.23) / PAPD4 (5q14.1)
TIAM2 (6q25.3) / PAPD4 (5q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PAPD4   26776
Cards
Entrez_Gene (NCBI)PAPD4  167153  poly(A) RNA polymerase D4, non-canonical
AliasesGLD2; TUT2
GeneCards (Weizmann)PAPD4
Ensembl hg19 (Hinxton)ENSG00000164329 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164329 [Gene_View]  chr5:79612417-79688243 [Contig_View]  PAPD4 [Vega]
ICGC DataPortalENSG00000164329
TCGA cBioPortalPAPD4
AceView (NCBI)PAPD4
Genatlas (Paris)PAPD4
WikiGenes167153
SOURCE (Princeton)PAPD4
Genetics Home Reference (NIH)PAPD4
Genomic and cartography
GoldenPath hg38 (UCSC)PAPD4  -     chr5:79612417-79688243 +  5q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAPD4  -     5q14.1   [Description]    (hg19-Feb_2009)
EnsemblPAPD4 - 5q14.1 [CytoView hg19]  PAPD4 - 5q14.1 [CytoView hg38]
Mapping of homologs : NCBIPAPD4 [Mapview hg19]  PAPD4 [Mapview hg38]
OMIM614121   
Gene and transcription
Genbank (Entrez)AK095818 AL833136 AW302247 BC026061 BC047581
RefSeq transcript (Entrez)NM_001114393 NM_001114394 NM_001297744 NM_001297745 NM_001349548 NM_001349549 NM_001349550 NM_001349551 NM_001349552 NM_001349553 NM_001349554 NM_173797
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PAPD4
Cluster EST : UnigeneHs.720183 [ NCBI ]
CGAP (NCI)Hs.720183
Alternative Splicing GalleryENSG00000164329
Gene ExpressionPAPD4 [ NCBI-GEO ]   PAPD4 [ EBI - ARRAY_EXPRESS ]   PAPD4 [ SEEK ]   PAPD4 [ MEM ]
Gene Expression Viewer (FireBrowse)PAPD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)167153
GTEX Portal (Tissue expression)PAPD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PIY7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PIY7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PIY7
Splice isoforms : SwissVarQ6PIY7
Catalytic activity : Enzyme2.7.7.19 [ Enzyme-Expasy ]   2.7.7.192.7.7.19 [ IntEnz-EBI ]   2.7.7.19 [ BRENDA ]   2.7.7.19 [ KEGG ]   
PhosPhoSitePlusQ6PIY7
Domains : Interpro (EBI)PAP_assoc   
Domain families : Pfam (Sanger)PAP_assoc (PF03828)   
Domain families : Pfam (NCBI)pfam03828   
Conserved Domain (NCBI)PAPD4
DMDM Disease mutations167153
Blocks (Seattle)PAPD4
SuperfamilyQ6PIY7
Human Protein AtlasENSG00000164329
Peptide AtlasQ6PIY7
HPRD15098
IPIIPI00167560   IPI00895778   IPI00965928   
Protein Interaction databases
DIP (DOE-UCLA)Q6PIY7
IntAct (EBI)Q6PIY7
FunCoupENSG00000164329
BioGRIDPAPD4
STRING (EMBL)PAPD4
ZODIACPAPD4
Ontologies - Pathways
QuickGOQ6PIY7
Ontology : AmiGOhematopoietic progenitor cell differentiation  polynucleotide adenylyltransferase activity  protein binding  ATP binding  cytosol  mRNA processing  hippocampus development  neuron differentiation  nuclear RNA-directed RNA polymerase complex  RNA polyadenylation  metal ion binding  retina development in camera-type eye  histone mRNA catabolic process  dark adaptation  
Ontology : EGO-EBIhematopoietic progenitor cell differentiation  polynucleotide adenylyltransferase activity  protein binding  ATP binding  cytosol  mRNA processing  hippocampus development  neuron differentiation  nuclear RNA-directed RNA polymerase complex  RNA polyadenylation  metal ion binding  retina development in camera-type eye  histone mRNA catabolic process  dark adaptation  
NDEx NetworkPAPD4
Atlas of Cancer Signalling NetworkPAPD4
Wikipedia pathwaysPAPD4
Orthology - Evolution
OrthoDB167153
GeneTree (enSembl)ENSG00000164329
Phylogenetic Trees/Animal Genes : TreeFamPAPD4
HOVERGENQ6PIY7
HOGENOMQ6PIY7
Homologs : HomoloGenePAPD4
Homology/Alignments : Family Browser (UCSC)PAPD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAPD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAPD4
dbVarPAPD4
ClinVarPAPD4
1000_GenomesPAPD4 
Exome Variant ServerPAPD4
ExAC (Exome Aggregation Consortium)PAPD4 (select the gene name)
Genetic variants : HAPMAP167153
Genomic Variants (DGV)PAPD4 [DGVbeta]
DECIPHERPAPD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPAPD4 
Mutations
ICGC Data PortalPAPD4 
TCGA Data PortalPAPD4 
Broad Tumor PortalPAPD4
OASIS PortalPAPD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAPD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPAPD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PAPD4
DgiDB (Drug Gene Interaction Database)PAPD4
DoCM (Curated mutations)PAPD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAPD4 (select a term)
intoGenPAPD4
Cancer3DPAPD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614121   
Orphanet
MedgenPAPD4
Genetic Testing Registry PAPD4
NextProtQ6PIY7 [Medical]
TSGene167153
GENETestsPAPD4
Target ValidationPAPD4
Huge Navigator PAPD4 [HugePedia]
snp3D : Map Gene to Disease167153
BioCentury BCIQPAPD4
ClinGenPAPD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD167153
Chemical/Pharm GKB GenePA134918975
Clinical trialPAPD4
Miscellaneous
canSAR (ICR)PAPD4 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAPD4
EVEXPAPD4
GoPubMedPAPD4
iHOPPAPD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:35:22 CEST 2017

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