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PAPLN (papilin, proteoglycan like sulfated glycoprotein)

Identity

Alias_symbol (synonym)MGC50452
Other alias-
HGNC (Hugo) PAPLN
LocusID (NCBI) 89932
Atlas_Id 71653
Location 14q24.2  [Link to chromosome band 14q24]
Location_base_pair Starts at 73237497 and ends at 73274639 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PAPLN (14q24.2) / CDC42 (1p36.12)PAPLN (14q24.2) / NDRG2 (14q11.2)PAPLN (14q24.2) / PAPLN (14q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PAPLN   19262
Cards
Entrez_Gene (NCBI)PAPLN  89932  papilin, proteoglycan like sulfated glycoprotein
Aliases
GeneCards (Weizmann)PAPLN
Ensembl hg19 (Hinxton)ENSG00000100767 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100767 [Gene_View]  chr14:73237497-73274639 [Contig_View]  PAPLN [Vega]
ICGC DataPortalENSG00000100767
TCGA cBioPortalPAPLN
AceView (NCBI)PAPLN
Genatlas (Paris)PAPLN
WikiGenes89932
SOURCE (Princeton)PAPLN
Genetics Home Reference (NIH)PAPLN
Genomic and cartography
GoldenPath hg38 (UCSC)PAPLN  -     chr14:73237497-73274639 +  14q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAPLN  -     14q24.2   [Description]    (hg19-Feb_2009)
EnsemblPAPLN - 14q24.2 [CytoView hg19]  PAPLN - 14q24.2 [CytoView hg38]
Mapping of homologs : NCBIPAPLN [Mapview hg19]  PAPLN [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK021713 AK125658 AK127354 AK131073 AK293773
RefSeq transcript (Entrez)NM_173462
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PAPLN
Cluster EST : UnigeneHs.509909 [ NCBI ]
CGAP (NCI)Hs.509909
Alternative Splicing GalleryENSG00000100767
Gene ExpressionPAPLN [ NCBI-GEO ]   PAPLN [ EBI - ARRAY_EXPRESS ]   PAPLN [ SEEK ]   PAPLN [ MEM ]
Gene Expression Viewer (FireBrowse)PAPLN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89932
GTEX Portal (Tissue expression)PAPLN
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95428   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95428  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95428
Splice isoforms : SwissVarO95428
PhosPhoSitePlusO95428
Domaine pattern : Prosite (Expaxy)BPTI_KUNITZ_1 (PS00280)    BPTI_KUNITZ_2 (PS50279)    IG_LIKE (PS50835)    PLAC (PS50900)    TSP1 (PS50092)   
Domains : Interpro (EBI)ADAM_spacer1    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    Ig_V-set    Kunitz_BPTI    Peptidase_M12B_ADAM-TS    PLAC    Prtase_inh_Kunz-CS    TSP1_rpt   
Domain families : Pfam (Sanger)ADAM_spacer1 (PF05986)    I-set (PF07679)    Kunitz_BPTI (PF00014)    PLAC (PF08686)    TSP_1 (PF00090)   
Domain families : Pfam (NCBI)pfam05986    pfam07679    pfam00014    pfam08686    pfam00090   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  IGv (SM00406)  KU (SM00131)  TSP1 (SM00209)  
Conserved Domain (NCBI)PAPLN
DMDM Disease mutations89932
Blocks (Seattle)PAPLN
SuperfamilyO95428
Human Protein AtlasENSG00000100767
Peptide AtlasO95428
HPRD15099
IPIIPI00795260   IPI00887374   IPI00445654   IPI00937971   IPI00938081   IPI00872077   IPI01010602   IPI01026262   IPI01025703   
Protein Interaction databases
DIP (DOE-UCLA)O95428
IntAct (EBI)O95428
FunCoupENSG00000100767
BioGRIDPAPLN
STRING (EMBL)PAPLN
ZODIACPAPLN
Ontologies - Pathways
QuickGOO95428
Ontology : AmiGOmetalloendopeptidase activity  serine-type endopeptidase inhibitor activity  proteinaceous extracellular matrix  proteolysis  zinc ion binding  negative regulation of endopeptidase activity  
Ontology : EGO-EBImetalloendopeptidase activity  serine-type endopeptidase inhibitor activity  proteinaceous extracellular matrix  proteolysis  zinc ion binding  negative regulation of endopeptidase activity  
NDEx NetworkPAPLN
Atlas of Cancer Signalling NetworkPAPLN
Wikipedia pathwaysPAPLN
Orthology - Evolution
OrthoDB89932
GeneTree (enSembl)ENSG00000100767
Phylogenetic Trees/Animal Genes : TreeFamPAPLN
HOVERGENO95428
HOGENOMO95428
Homologs : HomoloGenePAPLN
Homology/Alignments : Family Browser (UCSC)PAPLN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAPLN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAPLN
dbVarPAPLN
ClinVarPAPLN
1000_GenomesPAPLN 
Exome Variant ServerPAPLN
ExAC (Exome Aggregation Consortium)PAPLN (select the gene name)
Genetic variants : HAPMAP89932
Genomic Variants (DGV)PAPLN [DGVbeta]
DECIPHERPAPLN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPAPLN 
Mutations
ICGC Data PortalPAPLN 
TCGA Data PortalPAPLN 
Broad Tumor PortalPAPLN
OASIS PortalPAPLN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAPLN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPAPLN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PAPLN
DgiDB (Drug Gene Interaction Database)PAPLN
DoCM (Curated mutations)PAPLN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAPLN (select a term)
intoGenPAPLN
Cancer3DPAPLN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPAPLN
Genetic Testing Registry PAPLN
NextProtO95428 [Medical]
TSGene89932
GENETestsPAPLN
Target ValidationPAPLN
Huge Navigator PAPLN [HugePedia]
snp3D : Map Gene to Disease89932
BioCentury BCIQPAPLN
ClinGenPAPLN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89932
Chemical/Pharm GKB GenePA134914395
Clinical trialPAPLN
Miscellaneous
canSAR (ICR)PAPLN (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAPLN
EVEXPAPLN
GoPubMedPAPLN
iHOPPAPLN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:30 CEST 2017

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