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PAPPA-AS1 (PAPPA antisense RNA 1)

Identity

Alias_namesPAPPAS
PAPPA antisense RNA (non-protein coding)
PAPPA antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)PAPPA-AS
DIPAS
TAF4B
TAF2C2
TAFII105
NCRNA00156
Other aliasPAPPAAS
HGNC (Hugo) PAPPA-AS1
LocusID (NCBI) 493913
Atlas_Id 71657
Location 9q33.1  [Link to chromosome band 9q33]
Location_base_pair Starts at 116398158 and ends at 116400606 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PAPPA-AS1   35152
Cards
Entrez_Gene (NCBI)PAPPA-AS1  493913  PAPPA antisense RNA 1
AliasesDIPAS; NCRNA00156; PAPPA-AS; PAPPAAS; 
PAPPAS; TAF2C2; TAF4B; TAFII105
GeneCards (Weizmann)PAPPA-AS1
Ensembl hg19 (Hinxton)ENSG00000256040 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256040 [Gene_View]  chr9:116398158-116400606 [Contig_View]  PAPPA-AS1 [Vega]
ICGC DataPortalENSG00000256040
TCGA cBioPortalPAPPA-AS1
AceView (NCBI)PAPPA-AS1
Genatlas (Paris)PAPPA-AS1
WikiGenes493913
SOURCE (Princeton)PAPPA-AS1
Genetics Home Reference (NIH)PAPPA-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PAPPA-AS1  -     chr9:116398158-116400606 -  9q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAPPA-AS1  -     9q33.1   [Description]    (hg19-Feb_2009)
EnsemblPAPPA-AS1 - 9q33.1 [CytoView hg19]  PAPPA-AS1 - 9q33.1 [CytoView hg38]
Mapping of homologs : NCBIPAPPA-AS1 [Mapview hg19]  PAPPA-AS1 [Mapview hg38]
OMIM610689   
Gene and transcription
Genbank (Entrez)AY623011 AY623012
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PAPPA-AS1
Cluster EST : UnigeneHs.728832 [ NCBI ]
CGAP (NCI)Hs.728832
Alternative Splicing GalleryENSG00000256040
Gene ExpressionPAPPA-AS1 [ NCBI-GEO ]   PAPPA-AS1 [ EBI - ARRAY_EXPRESS ]   PAPPA-AS1 [ SEEK ]   PAPPA-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PAPPA-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)493913
GTEX Portal (Tissue expression)PAPPA-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5QFB9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5QFB9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5QFB9
Splice isoforms : SwissVarQ5QFB9
PhosPhoSitePlusQ5QFB9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PAPPA-AS1
DMDM Disease mutations493913
Blocks (Seattle)PAPPA-AS1
SuperfamilyQ5QFB9
Human Protein AtlasENSG00000256040
Peptide AtlasQ5QFB9
IPIIPI00514130   IPI00514644   
Protein Interaction databases
DIP (DOE-UCLA)Q5QFB9
IntAct (EBI)Q5QFB9
FunCoupENSG00000256040
BioGRIDPAPPA-AS1
STRING (EMBL)PAPPA-AS1
ZODIACPAPPA-AS1
Ontologies - Pathways
QuickGOQ5QFB9
Ontology : AmiGOmolecular_function  cellular_component  endoplasmic reticulum membrane  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  cellular_component  endoplasmic reticulum membrane  biological_process  integral component of membrane  
NDEx NetworkPAPPA-AS1
Atlas of Cancer Signalling NetworkPAPPA-AS1
Wikipedia pathwaysPAPPA-AS1
Orthology - Evolution
OrthoDB493913
GeneTree (enSembl)ENSG00000256040
Phylogenetic Trees/Animal Genes : TreeFamPAPPA-AS1
HOVERGENQ5QFB9
HOGENOMQ5QFB9
Homologs : HomoloGenePAPPA-AS1
Homology/Alignments : Family Browser (UCSC)PAPPA-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAPPA-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAPPA-AS1
dbVarPAPPA-AS1
ClinVarPAPPA-AS1
1000_GenomesPAPPA-AS1 
Exome Variant ServerPAPPA-AS1
ExAC (Exome Aggregation Consortium)PAPPA-AS1 (select the gene name)
Genetic variants : HAPMAP493913
Genomic Variants (DGV)PAPPA-AS1 [DGVbeta]
DECIPHERPAPPA-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPAPPA-AS1 
Mutations
ICGC Data PortalPAPPA-AS1 
TCGA Data PortalPAPPA-AS1 
Broad Tumor PortalPAPPA-AS1
OASIS PortalPAPPA-AS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAPPA-AS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPAPPA-AS1
BioMutasearch PAPPA-AS1
DgiDB (Drug Gene Interaction Database)PAPPA-AS1
DoCM (Curated mutations)PAPPA-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAPPA-AS1 (select a term)
intoGenPAPPA-AS1
Cancer3DPAPPA-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610689   
Orphanet
MedgenPAPPA-AS1
Genetic Testing Registry PAPPA-AS1
NextProtQ5QFB9 [Medical]
TSGene493913
GENETestsPAPPA-AS1
Target ValidationPAPPA-AS1
Huge Navigator PAPPA-AS1 [HugePedia]
snp3D : Map Gene to Disease493913
BioCentury BCIQPAPPA-AS1
ClinGenPAPPA-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD493913
Clinical trialPAPPA-AS1
Miscellaneous
canSAR (ICR)PAPPA-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAPPA-AS1
EVEXPAPPA-AS1
GoPubMedPAPPA-AS1
iHOPPAPPA-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:56 CEST 2017

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