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PAQR3 (progestin and adipoQ receptor family member 3)

Identity

Alias_namesprogestin and adipoQ receptor family member III
Other aliasRKTG
HGNC (Hugo) PAQR3
LocusID (NCBI) 152559
Atlas_Id 50305
Location 4q21.21  [Link to chromosome band 4q21]
Location_base_pair Starts at 78917940 and ends at 78939428 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PAQR3 (4q21.21) / CD46 (1q32.2)ULK4 (3p22.1) / PAQR3 (4q21.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PAQR3   30130
Cards
Entrez_Gene (NCBI)PAQR3  152559  progestin and adipoQ receptor family member 3
AliasesRKTG
GeneCards (Weizmann)PAQR3
Ensembl hg19 (Hinxton)ENSG00000163291 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163291 [Gene_View]  chr4:78917940-78939428 [Contig_View]  PAQR3 [Vega]
ICGC DataPortalENSG00000163291
TCGA cBioPortalPAQR3
AceView (NCBI)PAQR3
Genatlas (Paris)PAQR3
WikiGenes152559
SOURCE (Princeton)PAQR3
Genetics Home Reference (NIH)PAQR3
Genomic and cartography
GoldenPath hg38 (UCSC)PAQR3  -     chr4:78917940-78939428 -  4q21.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAQR3  -     4q21.21   [Description]    (hg19-Feb_2009)
EnsemblPAQR3 - 4q21.21 [CytoView hg19]  PAQR3 - 4q21.21 [CytoView hg38]
Mapping of homologs : NCBIPAQR3 [Mapview hg19]  PAQR3 [Mapview hg38]
OMIM614577   
Gene and transcription
Genbank (Entrez)AK055774 AK126273 AK291232 AL080110 AX775925
RefSeq transcript (Entrez)NM_001040202 NM_001350105 NM_001350106 NM_177453
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PAQR3
Cluster EST : UnigeneHs.657312 [ NCBI ]
CGAP (NCI)Hs.657312
Alternative Splicing GalleryENSG00000163291
Gene ExpressionPAQR3 [ NCBI-GEO ]   PAQR3 [ EBI - ARRAY_EXPRESS ]   PAQR3 [ SEEK ]   PAQR3 [ MEM ]
Gene Expression Viewer (FireBrowse)PAQR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152559
GTEX Portal (Tissue expression)PAQR3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6TCH7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6TCH7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6TCH7
Splice isoforms : SwissVarQ6TCH7
PhosPhoSitePlusQ6TCH7
Domains : Interpro (EBI)AdipoR/HlyIII-related   
Domain families : Pfam (Sanger)HlyIII (PF03006)   
Domain families : Pfam (NCBI)pfam03006   
Conserved Domain (NCBI)PAQR3
DMDM Disease mutations152559
Blocks (Seattle)PAQR3
SuperfamilyQ6TCH7
Human Protein AtlasENSG00000163291
Peptide AtlasQ6TCH7
HPRD17819
IPIIPI00457115   IPI00457116   IPI00329109   IPI00301648   IPI01025460   IPI00967804   
Protein Interaction databases
DIP (DOE-UCLA)Q6TCH7
IntAct (EBI)Q6TCH7
FunCoupENSG00000163291
BioGRIDPAQR3
STRING (EMBL)PAQR3
ZODIACPAQR3
Ontologies - Pathways
QuickGOQ6TCH7
Ontology : AmiGOGolgi membrane  MAPK cascade  negative regulation of protein phosphorylation  receptor activity  Golgi apparatus  negative regulation of neuron projection development  integral component of membrane  negative regulation of peptidyl-serine phosphorylation  protein localization to Golgi apparatus  negative regulation of MAP kinase activity  
Ontology : EGO-EBIGolgi membrane  MAPK cascade  negative regulation of protein phosphorylation  receptor activity  Golgi apparatus  negative regulation of neuron projection development  integral component of membrane  negative regulation of peptidyl-serine phosphorylation  protein localization to Golgi apparatus  negative regulation of MAP kinase activity  
NDEx NetworkPAQR3
Atlas of Cancer Signalling NetworkPAQR3
Wikipedia pathwaysPAQR3
Orthology - Evolution
OrthoDB152559
GeneTree (enSembl)ENSG00000163291
Phylogenetic Trees/Animal Genes : TreeFamPAQR3
HOVERGENQ6TCH7
HOGENOMQ6TCH7
Homologs : HomoloGenePAQR3
Homology/Alignments : Family Browser (UCSC)PAQR3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAQR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAQR3
dbVarPAQR3
ClinVarPAQR3
1000_GenomesPAQR3 
Exome Variant ServerPAQR3
ExAC (Exome Aggregation Consortium)PAQR3 (select the gene name)
Genetic variants : HAPMAP152559
Genomic Variants (DGV)PAQR3 [DGVbeta]
DECIPHERPAQR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPAQR3 
Mutations
ICGC Data PortalPAQR3 
TCGA Data PortalPAQR3 
Broad Tumor PortalPAQR3
OASIS PortalPAQR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAQR3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPAQR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PAQR3
DgiDB (Drug Gene Interaction Database)PAQR3
DoCM (Curated mutations)PAQR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAQR3 (select a term)
intoGenPAQR3
Cancer3DPAQR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614577   
Orphanet
MedgenPAQR3
Genetic Testing Registry PAQR3
NextProtQ6TCH7 [Medical]
TSGene152559
GENETestsPAQR3
Target ValidationPAQR3
Huge Navigator PAQR3 [HugePedia]
snp3D : Map Gene to Disease152559
BioCentury BCIQPAQR3
ClinGenPAQR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152559
Chemical/Pharm GKB GenePA134952039
Clinical trialPAQR3
Miscellaneous
canSAR (ICR)PAQR3 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAQR3
EVEXPAQR3
GoPubMedPAQR3
iHOPPAQR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:48:28 CEST 2017

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